Agrobacterium tumefaciens F2

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens F2 is a mesophilic, chemoheterotrophic bacterium that is Gram-negative, rod-shaped, and typically found in soil and plant-associated environments. As a mesophile, it thrives optimally at moderate temperatures, generally between 20°C and 30°C, making it well-suited for growth in temperate climates. Its chemoheterotrophic metabolism allows it to derive energy from organic compounds, utilizing them as both carbon and energy sources, which is particularly beneficial in nutrient-rich environments such as rhizospheres. The Gram-negative nature of A. tumefaciens F2 is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides. This structural feature not only contributes to its staining properties but also plays a role in its pathogenicity and interactions with host plants. The rod shape of the bacterium enables motility, which is essential for colonizing plant tissues. A. tumefaciens F2 is primarily associated with various plant species, where it infects wounds and facilitates the transfer of its T-DNA into the plant genome, leading to the formation of crown gall tumors. This unique ability to manipulate plant cell genetics exemplifies its role in biotechnology, particularly in genetic engineering applications. This microbe is also known for its capacity to produce opines, which serve as a nutrient source for itself and attract other microbes, thereby creating a unique ecological niche. Its role in plant-microbe interactions extends beyond pathogenicity, as it can also promote plant growth under certain conditions. In agricultural research, A. tumefaciens F2 has been harnessed for the development of genetically modified crops, demonstrating its significance in both ecological and biotechnological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainF2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens F2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens F2


Gene Summary

Adenine Count

22659 bp

Thymine Count

22819 bp

Guanine Count

29208 bp

Cytosine Count

30379 bp

Genome Length

105065 bp

Protein-coding Genes

119 genes

Non-Coding Genes

1 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
transposaseAGAU_RS23310Not Available-9900 - 1028313887.6
hypothetical proteinAGAU_RS23315Not Available-10661 - 1160535335.2
hypothetical proteinAGAU_RS23320Not Available-11637 - 1230224482.1
hypothetical proteinAGAU_RS23325Not Available-12362 - 125657695.29
relaxase/mobilization nucleaseAGAU_RS26660Not Available-12567 - 1350835299.0
plasmid mobilization proteinAGAU_RS23335Not Available-13832 - 1423914624.5
para family proteinAGAU_RS23340Not Available+15013 - 1572026634.9
hypothetical proteinAGAU_RS23345Not Available+15720 - 1613915248.2
helix-turn-helix domain-containing proteinAGAU_RS23350Not Available+16293 - 1685320744.9
duf736 family proteinAGAU_RS23355Not Available-16913 - 1725112487.6

Displaying genes 11 – 20 of 5873 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites