Pseudoxanthomonas spadix BD-a59

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Pseudoxanthomonas

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusPseudoxanthomonas
SpeciesPseudoxanthomonas spadix
StrainBD-a59

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgasoline-contaminated soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoxanthomonas spadix BD-a59

NC_016147.2

Gene Summary

Adenine Count

555833 bp

Thymine Count

560974 bp

Guanine Count

1167727 bp

Cytosine Count

1168020 bp

Genome Length

3452554 bp

Protein-coding Genes

3138 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gnat family n-acetyltransferaseDSC_RS04680Not AvailableNegative1042297 - 104282419537.6
cysteine desulfuraseDSC_RS04685Not AvailableNegative1042948 - 104413842520.3
fe-s cluster assembly protein sufdDSC_RS04690Not AvailableNegative1044222 - 104548445047.7
fe-s cluster assembly atpase sufcDSC_RS04695Not AvailableNegative1045481 - 104624527513.2
fe-s cluster assembly protein sufbDSC_RS04700Not AvailableNegative1046466 - 104793554112.3
suf system fe-s cluster assembly regulatorDSC_RS04705Not AvailableNegative1047953 - 104842016447.0
set domain-containing proteinDSC_RS04710Not AvailablePositive1048594 - 104906117401.8
3-hydroxybutyrate dehydrogenaseDSC_RS04715Not AvailablePositive1049181 - 104996626813.4
type 1 glutamine amidotransferase domain-containing proteinDSC_RS04720Not AvailablePositive1050081 - 105062018980.5
duf1439 domain-containing proteinDSC_RS04725Not AvailableNegative1050722 - 105129120240.0

Displaying genes 971 – 980 of 3204 in total

Metabolites

14 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm00011034-chlorobenzoateC7H4ClO2Chemical structure of 4-chlorobenzoateNot available
Average155.56Da
Monoisotopic154.9905306Da
BASm0001861(2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolC12H12O2Chemical structure of (2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolNot available
Average188.226Da
Monoisotopic188.0837296Da
BASm0001885Tetra-mu3-sulfido-tetrairon(1+)Fe4S4Chemical structure of Tetra-mu3-sulfido-tetrairon(1+)Not available
Average351.62Da
Monoisotopic351.62748Da
BASm0014037Fumaric acidC4H4O4Chemical structure of Fumaric acid110-17-8
Average116.0722Da
Monoisotopic116.010958616Da
BASm0014038Malic acidC4H6O5Chemical structure of Malic acid97-67-6
Average134.0874Da
Monoisotopic134.021523302Da
BASm0014042Oxoglutaric acidC5H6O5Chemical structure of Oxoglutaric acid328-50-7
Average146.0981Da
Monoisotopic146.021523302Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm00175184-Hydroxy-2-oxopentanoateC5H7O4Chemical structure of 4-Hydroxy-2-oxopentanoate3318-73-8
Average131.108Da
Monoisotopic131.034982285Da

Displaying 1–10 of 14 metabolites

Health Effects

No health effects information available for this bacterium.