Cupriavidus necator N-1

Gram-negativeRodMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Cupriavidus

Description

Ralstonia eutropha strain H16 is a facultatively lithoautotrophic, soil dwelling betaproteobacterium that is used for the production of a biodegradable thermoplastic (Biopol) on an industrial scale. It is able to grow with only H2 and CO2 as its sole sources of energy and carbon. In the absence of O2 it can also grow anaerobically using dentrification as an energy source. It also serves as a model organism for genetics and control of autotrophic carbon dioxide fixation and hydrogen oxidation. Taking advantage of its lithoautotrophic capability when growing on H2, it might be developed as cell factory in a future hydrogen-based biotechnology for the production of diverse, commercially valuable compounds such as metabolites and polymers. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusCupriavidus
SpeciesCupriavidus necator
StrainN-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Cupriavidus necator N-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature30
Temperature rangeMesophilic
HabitatFresh water - Soil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceHeterotroph - Chemolithoautotroph
PathogenicityNo

Genome Summary

Cupriavidus necator N-1


Gene Summary

Adenine Count

290866 bp

Thymine Count

288033 bp

Guanine Count

461624 bp

Cytosine Count

458652 bp

Genome Length

1499175 bp

Protein-coding Genes

1412 genes

Non-Coding Genes

2 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
sdr family nad(p)-dependent oxidoreductaseCNE_RS30255Not Available+12150 - 1298028542.0
nuclear transport factor 2 family proteinCNE_RS30260Not Available+13025 - 1366624859.6
alkene reductaseCNE_RS30265Not Available+13700 - 1481239080.6
fadd3 family acyl-coa ligaseCNE_RS30270Not Available+14809 - 1638656249.1
transposaseCNE_RS38730Not Available+16784 - 1706810931.3
dsba family proteinCNE_RS42945Not Available+17380 - 175958041.79
dsba family proteinCNE_RS42950Not Available+17613 - 1822722033.4
acetate--coa ligase family proteinCNE_RS30285Not Available-18378 - 2047473517.9
tripartite tricarboxylate transporter substrate binding proteinCNE_RS30290Not Available-20567 - 2153234020.3
mmge/prpd family proteinCNE_RS30295Not Available-21611 - 2295746490.8

Displaying genes 11 – 20 of 7968 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1766 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1766 metabolites