Hafnia alvei ATCC 51873

Gram-negativeFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Hafniaceae

Genus

Hafnia

Description

Hafnia alvei ATCC 51873 is a Gram-negative, rod-shaped bacterium categorized as a mesophile, thriving optimally at moderate temperatures between 20°C to 45°C. As a chemoheterotroph, it derives energy and carbon from organic compounds, typically engaging in fermentation processes. This microbe is commonly found in a variety of body sites across different species, residing primarily in the intestinal tracts of humans and animals, as well as in environmental niches such as soil and water. The Gram-negative characteristic of Hafnia alvei indicates it has a thin peptidoglycan layer surrounded by an outer membrane, which is composed of lipopolysaccharides. This structure contributes to its ability to evade certain immune responses. The rod shape enhances its mobility and colonization capabilities within various environments, facilitating interactions with other microorganisms and hosts. As a mesophile, Hafnia alvei adapts to the moderate temperatures typical of its native habitats, including the mammalian gut where it plays a role in digestion. Its classification as a chemoheterotroph allows it to utilize diverse organic substrates, such as sugars and amino acids, reflecting its ecological flexibility. Hafnia alvei has been studied for its probiotic potential, with some strains exhibiting beneficial effects on gut health. Moreover, it has garnered attention in clinical microbiology due to its occasional association with opportunistic infections, particularly in immunocompromised individuals. Its resilience and adaptability make it a significant player in microbiome research, emphasizing its role in both health and disease contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyHafniaceae
GenusHafnia
SpeciesHafnia alvei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hafnia alvei ATCC 51873

Accession NumberAGCI00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4678 genes

Non-Coding Genes

337 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Lysr family transcriptional regulatorHMPREF0454_00017Not Available-17062 - 1797033200.2
3-oxoacyl-(acyl-carrier-protein) reductaseHMPREF0454_00018Not Available+18090 - 1884826968.6
putative methyl-accepting chemotaxis protein iHMPREF0454_00019Not Available+19196 - 2057549944.0
hypothetical proteinHMPREF0454_00020Not Available+20708 - 209448993.64
Dna adenine methylaseHMPREF0454_00021Not Available-20934 - 2169829381.6
Trna-ser;Not AvailableNot Available+20948 - 21035Not Available
Trna-asn;Not AvailableNot Available+21111 - 21186Not Available
Hypothetical proteinHMPREF0454_00022Not Available-21845 - 219915264.55
Tail fibers proteinHMPREF0454_00023Not Available-22151 - 2272321387.0
Tail collar domain proteinHMPREF0454_00024Not Available-22723 - 2366732168.5

Displaying genes 1 – 10 of 5015 in total

Pathways

171 pathways

Metabolites

361 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da

Displaying 1–10 of 361 metabolites