Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Hafniaceae
Genus
Hafnia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Hafniaceae |
| Genus | Hafnia |
| Species | Hafnia alvei |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Hafnia alvei ATCC 51873
Accession NumberAGCI00000000.1
Gene Summary
Adenine Count
1265814 bp
Thymine Count
1262255 bp
Guanine Count
1172649 bp
Cytosine Count
1181591 bp
Genome Length
4882309 bp
Protein-coding Genes
4678 genes
Non-Coding Genes
337 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| crispr-associated helicase cas3 | HMPREF0454_00343 | Not Available | - | 343291 - 346440 | 118415.0 |
| hypothetical protein | HMPREF0454_00344 | Not Available | - | 346737 - 347045 | 11267.5 |
| bicyclomycin resistance protein | HMPREF0454_00345 | Not Available | - | 348133 - 349284 | 41737.8 |
| 16s pseudouridylate 516 synthase | HMPREF0454_00346 | Not Available | - | 349432 - 350154 | 27013.1 |
| putative metal-binding protein | HMPREF0454_00347 | Not Available | + | 350416 - 350691 | 10072.9 |
| helicase protein | HMPREF0454_00348 | Not Available | + | 350716 - 352476 | 66570.6 |
| ribosomal l25p family protein | HMPREF0454_00349 | Not Available | + | 352622 - 352906 | 10747.9 |
| nucleoid-associated protein ndpa | HMPREF0454_00350 | Not Available | - | 352998 - 354005 | 37850.6 |
| hypothetical protein | HMPREF0454_00351 | Not Available | + | 354183 - 354443 | 9542.3 |
| arylsulfatase | HMPREF0454_00352 | Not Available | + | 354474 - 356258 | 66993.4 |
Pathways
171 pathways
Pyruvate Decarboxylation to Acetyl-CoA
Pyruvate Decarboxylation to Acetyl-CoA
Lipoate Biosynthesis and Incorporation I
Lipoate Biosynthesis and Incorporation I
Pantothenate and CoA Biosynthesis
Pantothenate and CoA Biosynthesis
2-Oxoglutarate Decarboxylation to Succinyl-CoA
2-Oxoglutarate Decarboxylation to Succinyl-CoA
Xylose Degradation I
Xylose Degradation I
Methylphosphonate Degradation I
Methylphosphonate Degradation I
L-Arabinose Degradation I
L-Arabinose Degradation I
Ribose Degradation
Ribose Degradation