Phocaeicola vulgatus CL09T03C04

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus CL09T03C04 is a Gram-positive, rod-shaped bacterium that exists primarily in a single-cell arrangement and is classified as an anaerobe. This species is host-associated, suggesting its ecological role is closely tied to specific host organisms, where it may contribute to or influence the host's microbiome composition. The anaerobic nature of P. vulgatus CL09T03C04 indicates that it thrives in environments devoid of oxygen, which is typical for many bacteria residing within host tissues or in the gastrointestinal tract. The single-cell arrangement may reflect its ecological strategy, allowing for efficient nutrient absorption and interaction with the host's immune responses. The presence of this microbe in host-associated environments may indicate its potential role in digestive processes or in maintaining gut homeostasis. The advantages conferred by its anaerobic metabolism could facilitate survival in nutrient-rich, low-oxygen conditions, which are commonly found in the gastrointestinal tracts of various hosts. Understanding the specific interactions and functions of P. vulgatus CL09T03C04 within its host could provide valuable insights into its contributions to host health and microbial community dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainCL09T03C04

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus CL09T03C04
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus CL09T03C04


Gene Summary

Adenine Count

1433763 bp

Thymine Count

1416605 bp

Guanine Count

1011813 bp

Cytosine Count

1038238 bp

Genome Length

4900419 bp

Protein-coding Genes

4012 genes

Non-Coding Genes

130 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinHMPREF1058_01918Not Available-2344556 - 234513721872.3
hypothetical proteinHMPREF1058_01919Not Available-2345257 - 234570917336.7
Hypothetical proteinHMPREF1058_01920Not Available-2345699 - 234606413684.8
MetallohydrolaseHMPREF1058_01921Not Available-2346067 - 234680126831.6
Dna repair proteinHMPREF1058_01922Not Available-2346801 - 234779036503.7
3_nc_021789: atpase containing proteinHMPREF1058_01923Not Available-2347802 - 234979674934.6
hypothetical proteinHMPREF1058_01924Not Available-2349793 - 235008011062.6
hypothetical proteinHMPREF1058_01925Not Available-2350080 - 23503169031.23
Transcriptional regulatorHMPREF1058_01926Not Available-2350335 - 235088621758.0
Isl3 family transposaseHMPREF1058_03636Not Available+4397143 - 439813538987.4

Displaying genes 21 – 30 of 4142 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites