Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola dorei |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola dorei CL02T12C06
Accession NumberAGXJ00000000.1
Gene Summary
Adenine Count
1756647 bp
Thymine Count
1710049 bp
Guanine Count
1247135 bp
Cytosine Count
1283480 bp
Genome Length
5997311 bp
Protein-coding Genes
5172 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | HMPREF1064_04382 | Not Available | - | 4998343 - 4999839 | 56725.8 |
| hypothetical protein | HMPREF1064_04383 | Not Available | + | 5000009 - 5002318 | 87941.3 |
| hypothetical protein | HMPREF1064_04384 | Not Available | + | 5002463 - 5002825 | 14004.2 |
| susc/raga family tonb-linked outer membrane protein | HMPREF1064_04385 | Not Available | + | 5003380 - 5006625 | 119615.0 |
| hypothetical protein | HMPREF1064_04386 | Not Available | + | 5006640 - 5008130 | 55950.7 |
| methylmalonyl-coa mutase large subunit | HMPREF1064_04387 | Not Available | - | 5008455 - 5010605 | 79110.7 |
| methylmalonyl-coa mutase, small subunit | HMPREF1064_04388 | Not Available | - | 5010615 - 5012525 | 70630.6 |
| aspt/yide/ybjl antiporter duplication domain-containing protein | HMPREF1064_04389 | Not Available | + | 5012812 - 5014482 | 60143.8 |
| hypothetical protein | HMPREF1064_04390 | Not Available | + | 5014594 - 5016228 | 62073.9 |
| rna polymerase sigma-70 factor, expansion family 1 | HMPREF1064_04391 | Not Available | + | 5016268 - 5016849 | 22683.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
