Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola dorei |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola dorei CL02T12C06
Accession NumberAGXJ00000000.1
Gene Summary
Adenine Count
1756647 bp
Thymine Count
1710049 bp
Guanine Count
1247135 bp
Cytosine Count
1283480 bp
Genome Length
5997311 bp
Protein-coding Genes
5172 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hydrogenase maturation gtpase hydf | HMPREF1064_04343 | Not Available | - | 4946627 - 4947817 | 43879.6 |
| iron-only hydrogenase maturation rsam protein hydg | HMPREF1064_04344 | Not Available | - | 4947867 - 4949285 | 53417.3 |
| iron-only hydrogenase maturation rsam protein hyde | HMPREF1064_04345 | Not Available | - | 4949298 - 4950335 | 39012.0 |
| hypothetical protein | HMPREF1064_04346 | Not Available | - | 4950535 - 4952283 | 65068.6 |
| chaperonin | HMPREF1064_04347 | Not Available | + | 4952379 - 4952651 | 9740.92 |
| chaperonin | HMPREF1064_04348 | Not Available | + | 4952693 - 4954330 | 58147.1 |
| Trna-thr | Not Available | Not Available | + | 4954569 - 4954642 | Not Available |
| mate efflux family protein | HMPREF1064_04349 | Not Available | + | 4954764 - 4956146 | 50742.1 |
| hypothetical protein | HMPREF1064_04350 | Not Available | + | 4956182 - 4956766 | 22252.7 |
| hypothetical protein | HMPREF1064_04351 | Not Available | + | 4956956 - 4957495 | 19927.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
