Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola dorei |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola dorei CL02T12C06
Accession NumberAGXJ00000000.1
Gene Summary
Adenine Count
1756647 bp
Thymine Count
1710049 bp
Guanine Count
1247135 bp
Cytosine Count
1283480 bp
Genome Length
5997311 bp
Protein-coding Genes
5172 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 3-dehydroquinate dehydratase, type ii | HMPREF1064_01849 | Not Available | + | 2118638 - 2119060 | 15728.1 |
| pyruvate kinase | HMPREF1064_01850 | Not Available | + | 2119093 - 2120556 | 54241.6 |
| hypothetical protein | HMPREF1064_01851 | Not Available | + | 2120572 - 2121210 | 24376.5 |
| ribosome-binding factor a | HMPREF1064_01852 | Not Available | + | 2121284 - 2121619 | 12972.9 |
| hypothetical protein | HMPREF1064_01853 | Not Available | + | 2121629 - 2122867 | 45830.1 |
| pyridoxal kinase | HMPREF1064_01854 | Not Available | - | 2123253 - 2124125 | 32875.6 |
| glutamate racemase | HMPREF1064_01855 | Not Available | - | 2124182 - 2125054 | 32322.2 |
| hypothetical protein | HMPREF1064_01856 | Not Available | - | 2125130 - 2125633 | 19288.3 |
| hypothetical protein | HMPREF1064_01857 | Not Available | - | 2125691 - 2126206 | 18967.6 |
| outer membrane protein assembly complex, yaet protein | HMPREF1064_01858 | Not Available | - | 2126227 - 2128866 | 100661.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
