Ruegeria conchae str. DSM 29317

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria conchae strain DSM 29317 is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism and thrives optimally at a temperature of 29.0 °C. This species is part of the genus Ruegeria, which is known for its marine habitat associations. The Gram-negative nature of R. conchae indicates the presence of a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, a characteristic that often influences the bacterium’s interactions within its environment. As an aerobic organism, R. conchae requires oxygen for its metabolic processes, which suggests a potential role in nutrient cycling within its native ecological niches, likely in marine environments. The optimal growth temperature of 29.0 °C aligns with the typical thermal conditions found in many coastal waters, enabling R. conchae to thrive in these ecosystems. The inherent traits of Ruegeria conchae str. DSM 29317 highlight its specialization for life in nutrient-rich marine habitats, where it may engage in complex interactions with other microorganisms. This specialization could provide insights into the role of such bacteria in biogeochemical processes, particularly in the cycling of carbon and nitrogen in marine ecosystems. Overall, the physiological characteristics of R. conchae underscore its potential contribution to the microbial diversity and ecological dynamics of marine environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria conchae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria conchae str. DSM 29317

Accession NumberRCCT00000000.1

Gene Summary

Adenine Count

997434 bp

Thymine Count

996553 bp

Guanine Count

1264325 bp

Cytosine Count

1246353 bp

Genome Length

4504665 bp

Protein-coding Genes

4343 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
saccharopine dehydrogenase (nad+, l-lysine-forming)CLV75_3727Not Available+3720629 - 372168437805.6
saccharopine dehydrogenase (nadp+, l-glutamate forming)CLV75_3728Not Available+3721688 - 372283042013.7
uncharacterized protein duf1127CLV75_3729Not Available-3722894 - 37230947407.88
uncharacterized protein duf1127CLV75_3730Not Available-3723152 - 37233889144.74
uncharacterized protein duf3775CLV75_3731Not Available-3723554 - 372387111514.6
hypothetical proteinCLV75_3732Not Available-3723957 - 372472729388.0
rna polymerase sigma-70 factor (ecf subfamily)CLV75_3733Not Available+3724877 - 372553324830.8
chrr-like anti-ecfsigma factorCLV75_3734Not Available+3725544 - 372619423090.8
hypothetical proteinCLV75_3735Not Available+3726247 - 372664814373.0
dna recombination protein rmucCLV75_3736Not Available-3726652 - 372788145104.2

Displaying genes 3661 – 3670 of 4412 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites