Kangiella geojedonensis str. YCS-5

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Kangiellales

Family

Kangiellaceae

Genus

Kangiella

Description

Kangiella geojedonensis strain YCS-5 is a Gram-negative, non-spore-forming rod-shaped bacterium that exhibits optimal growth at a temperature of 29.0°C and requires aerobic conditions for survival. This microbe showcases distinct morphological and physiological characteristics that align with its classification within the Kangiella genus. The Gram-negative nature indicates a thinner peptidoglycan layer in its cell wall, which is a common feature among many aquatic and soil bacteria, potentially influencing its environmental adaptability. The rod shape of K. geojedonensis str. YCS-5 may confer advantages in motility and nutrient uptake, which are critical for survival in various environments. The aerobic requirement suggests that this organism is likely involved in processes that require oxygen, which might include the degradation of organic materials or participation in biogeochemical cycles. Given its optimal growth at 29.0°C, Kangiella geojedonensis str. YCS-5 may thrive in moderately warm environments, such as those found in certain freshwater ecosystems. This temperature preference indicates its potential role in the microbial communities of these habitats, where it may contribute to nutrient cycling and the overall health of the ecosystem. Understanding the specific functions and interactions of K. geojedonensis in its natural habitat could provide valuable insights into the dynamics of microbial life in similar ecological niches.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderKangiellales
FamilyKangiellaceae
GenusKangiella
SpeciesKangiella geojedonensis
StrainYCS-5

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kangiella geojedonensis str. YCS-5


Gene Summary

Adenine Count

701135 bp

Thymine Count

701787 bp

Guanine Count

544610 bp

Cytosine Count

547710 bp

Genome Length

2495242 bp

Protein-coding Genes

2268 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaTQ33_RS00005B4F0U5+1 - 139252485.6
dna polymerase iii subunit betaTQ33_RS00010P0A120+1424 - 252741126.2
dna replication/repair protein recfTQ33_RS00015B8CH73+2573 - 369142795.4
dna topoisomerase (atp-hydrolyzing) subunit bTQ33_RS00020Q9KVX3+3718 - 614491026.7
ppk2 family polyphosphate kinaseTQ33_RS00025Q6N140-6194 - 709035322.7
dodecin family proteinTQ33_RS00030Not Available+7214 - 74177433.05
helicase hera-like domain-containing proteinTQ33_RS00035P39342-7484 - 898355395.0
ubiquinone biosynthesis accessory factor ubikTQ33_RS00040Q46868-9117 - 93569257.21
sirb2 family proteinTQ33_RS00045Not Available-9381 - 974313569.5
yigz family proteinTQ33_RS00050P27862-9730 - 1040724630.1

Displaying genes 1 – 10 of 2316 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

137 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da

Displaying 1–10 of 137 metabolites