Xenorhabdus khoisanae str. MCB

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Xenorhabdus

Description

Xenorhabdus khoisanae str. MCB is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolism. This organism is part of a broader group of bacteria known for their association with nematodes, which often play a role in biological control of insect pests. The aerobic nature of X. khoisanae str. MCB suggests that it requires oxygen for growth and metabolic processes, which may influence its environmental distribution and interactions with other microbial communities. The morphological characteristics, particularly its rod shape, indicate that X. khoisanae str. MCB may possess specific structural adaptations that facilitate its survival in aerobic environments. Such adaptations could include the presence of specialized respiratory systems that optimize energy production in the presence of oxygen. Xenorhabdus species are often studied for their potential applications in biocontrol and bioremediation, although the specific applications of X. khoisanae str. MCB remain to be elucidated. The ability to thrive in aerobic conditions may provide insights into its ecological roles, particularly in oxygen-rich habitats where it could interact with other microorganisms and contribute to nutrient cycling or the degradation of organic matter. Overall, the traits of X. khoisanae str. MCB underscore its potential significance within its ecological niche, particularly in relation to its interactions with nematodes and its capacity to adapt to aerobic environments. Further research may reveal more about its functional roles within microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusXenorhabdus
SpeciesXenorhabdus khoisanae
StrainMCB

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xenorhabdus khoisanae str. MCB


Gene Summary

Adenine Count

1305855 bp

Thymine Count

1321234 bp

Guanine Count

1020928 bp

Cytosine Count

1010169 bp

Genome Length

4658186 bp

Protein-coding Genes

3662 genes

Non-Coding Genes

293 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
phage baseplate proteinAB204_00550Not Available-142007 - 14242916011.0
hypothetical proteinAB204_00555Not Available-142440 - 14405659958.2
hypothetical proteinAB204_00560Not Available-144056 - 14474225097.0
hypothetical proteinAB204_00565Not Available-144739 - 1449367306.73
phage tail proteinAB204_00570Not Available-144933 - 14539117394.8
Putative tail sheath proteinAB204_00575Not Available-145407 - 14661544879.6
Tail sheath proteinAB204_00580Not Available-146682 - 14811852906.9
Putative tail sheath proteinAB204_00585Not Available-148144 - 14921139204.6
phage tail proteinAB204_00590Not Available-149251 - 14970016539.5
AttlNot AvailableNot Available+225364 - 225375Not Available

Displaying genes 1 – 10 of 3955 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

283 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 283 metabolites