Shinella sp. HZN7

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusShinella
SpeciesShinella sp. HZN7
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shinella sp. HZN7

NZ_CP015737.1NZ_CP015741.1NZ_CP015748.1NZ_CP015739.1NZ_CP015745.1NZ_CP015742.1NZ_CP015736.1NZ_CP015746.1NZ_CP015738.1NZ_CP015744.1NZ_CP015747.1NZ_CP015740.1NZ_CP015743.1

Gene Summary

Adenine Count

102122 bp

Thymine Count

107513 bp

Guanine Count

206401 bp

Cytosine Count

204503 bp

Genome Length

620539 bp

Protein-coding Genes

586 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

13

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
trbc/virb2 family proteinshn_RS32080Not Available+92084 - 9240711091.0
type iv secretion system protein virb3shn_RS32085Not Available+92409 - 9269910954.8
virb4 family type iv secretion/conjugal transfer atpaseshn_RS32090Q6FYW7+92696 - 9510789789.2
transglycosylase slt domain-containing proteinshn_RS32095Not Available+95100 - 9626341402.2
type iv secretion system proteinshn_RS32100Not Available+96274 - 9699024594.4
hypothetical proteinshn_RS36700Not Available+96997 - 971705885.29
type iv secretion system proteinshn_RS32105Not Available+97175 - 9819436510.0
hypothetical proteinshn_RS32110Not Available+98250 - 984868981.6
hypothetical proteinshn_RS32115Not Available+98503 - 9887413052.5
virb8 family proteinshn_RS32120Not Available+99029 - 9976327723.7

Displaying genes 7091 – 7100 of 7132 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

60 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00077452-dehydro-3,6-dideoxy-6-sulfo-D-gluconateC6H10O8SChemical structure of 2-dehydro-3,6-dideoxy-6-sulfo-D-gluconateNot available
Average242.2Da
Monoisotopic242.0096385Da
BASm0007763(2S)-2-methylbutanoyl-CoAC26H40N7O17P3SChemical structure of (2S)-2-methylbutanoyl-CoANot available
Average847.62Da
Monoisotopic847.1436193Da
BASm0007837(2S)-3-sulfolactaldehydeC3H5O5SChemical structure of (2S)-3-sulfolactaldehydeNot available
Average153.13Da
Monoisotopic152.986318Da
BASm0008144D-erythritol 1-phosphateC4H9O7PChemical structure of D-erythritol 1-phosphateNot available
Average200.084Da
Monoisotopic200.0096868Da
BASm0008404(indol-3-yl)acetyl-L-aspartateC14H12N2O5Chemical structure of (indol-3-yl)acetyl-L-aspartateNot available
Average288.26Da
Monoisotopic288.075718654Da
BASm0009166N-(4-oxoglutaryl)-L-cysteinylglycineC10H12N2O7SNot availableNot available
Average304.27Da
Monoisotopic304.037619068Da
BASm00101116-sulfo-alpha-D-quinovoseC6H11O8SChemical structure of 6-sulfo-alpha-D-quinovoseNot available
Average243.21Da
Monoisotopic243.0180121Da
BASm0010315(Z)-2-methylureidoacrylateC5H7N2O3Chemical structure of (Z)-2-methylureidoacrylateNot available
Average143.123Da
Monoisotopic143.0462157Da
BASm0010467N-acetyl-S-(2-succino)-L-cysteineC9H10NO7SChemical structure of N-acetyl-S-(2-succino)-L-cysteineNot available
Average276.24Da
Monoisotopic276.01944358Da
BASm0010655(Z)-2-methylaminoacrylateC4H6NO2Chemical structure of (Z)-2-methylaminoacrylateNot available
Average100.098Da
Monoisotopic100.040402017Da

Displaying 51–60 of 60 metabolites