Treponema succinifaciens DSM 2489

Gram-negativeMotileAnaerobic

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Treponemataceae

Genus

Treponema

Description

Treponema succinifaciens DSM 2489 is a unique microbe that exhibits several distinct characteristics. This microbe prefers a moderate temperature range, categorized as mesophilic, with optimal growth between 25-37°C. It is a chemotroph, meaning it derives energy from the chemical breakdown of organic and inorganic molecules, specifically succinate, its preferred energy source. The microbe produces energy through a process known as anaerobic respiration, utilizing the succinate as a substrate to generate ATP. Treponema succinifaciens DSM 2489 is a gram-negative bacterium, characterized by its thin peptidoglycan layer. Its shape is spiral or helical, a characteristic typical of the genus Treponema. The microbe is found in a variety of body sites, including the oral cavity, nasal passages, and skin, across all possible species. Oxygen is not a preferred requirement for this microbe, classified as an obligate anaerobe, meaning it cannot survive in the presence of oxygen. In fact, it is inhibited by oxygen and will not grow in aerobic environments. This anaerobic nature suggests that it has adapted to environments with low or no oxygen availability. In addition to its unique characteristics, Treponema succinifaciens DSM 2489 has been found to be involved in the breakdown of succinate, a key step in the fermentation of certain sugars. This process is important for the production of bioproducts, such as biofuels and biochemicals. Further research on this microbe has the potential to unlock new pathways for biotechnology applications.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema succinifaciens
StrainDSM 2489

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Treponema succinifaciens DSM 2489


Gene Summary

Adenine Count

54490 bp

Thymine Count

47070 bp

Guanine Count

34479 bp

Cytosine Count

29533 bp

Genome Length

165572 bp

Protein-coding Genes

163 genes

Non-Coding Genes

4 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative baseplate j family proteinTRESU_RS13115Not Available+1306 - 4272112394.0
hypothetical proteinTRESU_RS13120Not Available+4275 - 476919146.1
Putative tail sheath proteinTRESU_RS13125Not Available+4786 - 599144203.6
phage tail proteinTRESU_RS13130Not Available+6046 - 647415920.8
hypothetical proteinTRESU_RS13135Not Available+6519 - 781749591.2
hypothetical proteinTRESU_RS13140Not Available+7877 - 821512339.0
Hypothetical proteinTRESU_RS13145Not Available+8218 - 862515593.9
phage tail proteinTRESU_RS14455Not Available+8616 - 942831133.0
Putative baseplate hub and tail lysozymeTRESU_RS14460Not Available+9438 - 1144173456.2
hypothetical proteinTRESU_RS13100Not Available+14 - 43616138.7

Displaying genes 1 – 10 of 2836 in total

Metabolites

118 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0002593(2E)-dodecenoyl-CoAC33H52N7O17P3SChemical structure of (2E)-dodecenoyl-CoA1066-12-2
Average943.789Da
Monoisotopic943.2353235Da
BASm0002759dTDP-beta-L-rhamnoseC16H24N2O15P2Not availableNot available
Average546.316Da
Monoisotopic546.066289237Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm00034972-C-methyl-D-erythritol 2,4-cyclic diphosphateC5H10O9P2Chemical structure of 2-C-methyl-D-erythritol 2,4-cyclic diphosphate143488-44-2
Average276.075Da
Monoisotopic275.9800049Da

Displaying 1–10 of 118 metabolites