Thermodesulfobacterium geofontis OPF15

RodAnaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Thermodesulfobacteria

Order

Thermodesulfobacteriales

Family

Thermodesulfobacteriaceae

Genus

Thermodesulfobacterium

Description

Thermodesulfobacterium geofontis OPF15 is a rod-shaped, anaerobic bacterium predominantly found in freshwater environments. This microbe thrives in oxygen-depleted conditions, where it plays a crucial role in biogeochemical cycles. The rod morphology of T. geofontis OPF15 is indicative of its adaptation to its specific habitat, which may influence its motility and nutrient uptake mechanisms. As an anaerobe, T. geofontis OPF15 contributes to the degradation of organic matter in freshwater ecosystems, potentially facilitating the transformation of sulfur compounds. The metabolic pathways utilized by this organism are likely to be pivotal in maintaining the redox balance within its habitat. Given its anaerobic nature, T. geofontis OPF15 may also interact with various microbial communities, impacting the overall microbial diversity and functioning of freshwater ecosystems. Overall, the presence of Thermodesulfobacterium geofontis OPF15 in freshwater environments highlights the importance of anaerobic microorganisms in nutrient cycling and ecosystem dynamics, providing insights into the complexities of microbial interactions in low-oxygen conditions.

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassThermodesulfobacteria
OrderThermodesulfobacteriales
FamilyThermodesulfobacteriaceae
GenusThermodesulfobacterium
SpeciesThermodesulfobacterium geofontis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatFresh water
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thermodesulfobacterium geofontis OPF15

Accession NumberNC_015682.1

Gene Summary

Adenine Count

569130 bp

Thymine Count

565332 bp

Guanine Count

253558 bp

Cytosine Count

246357 bp

Genome Length

1634377 bp

Protein-coding Genes

1649 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
s1 rna-binding domain-containing proteinTOPB45_RS04315Not Available+821571 - 82300155456.1
signal peptide peptidase sppaTOPB45_RS04320Not Available+823017 - 82388331794.4
hu family dna-binding proteinTOPB45_RS04325Not Available+823886 - 82509446358.7
imp dehydrogenaseTOPB45_RS04330Not Available+825124 - 82659353337.1
type ii secretion system f family proteinTOPB45_RS04335Not Available+826595 - 82780644678.9
magnesium transporter cora family proteinTOPB45_RS04340Not Available+827830 - 82876836635.1
undecaprenyl-diphosphate phosphataseTOPB45_RS04345Not Available+828783 - 82952927576.6
class i sam-dependent methyltransferaseTOPB45_RS04350Not Available+829536 - 83017724494.0
peptide chain release factor n(5)-glutamine methyltransferaseTOPB45_RS04355Not Available+830174 - 83103433566.3
udp-n-acetylglucosamine 1-carboxyvinyltransferaseTOPB45_RS04360Not Available+830995 - 83226346409.4

Displaying genes 871 – 880 of 1701 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

20 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm00015513D-3,5/4-trihydroxycyclohexane-1,2-dioneC6H8O5Chemical structure of 3D-3,5/4-trihydroxycyclohexane-1,2-dioneNot available
Average160.125Da
Monoisotopic160.0371734Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002749ADP-alpha-D-glucoseC16H23N5O15P2Chemical structure of ADP-alpha-D-glucoseNot available
Average587.329Da
Monoisotopic587.0676862Da
BASm0002844UDP-alpha-D-galacturonateC15H19N2O18P2Chemical structure of UDP-alpha-D-galacturonateNot available
Average577.262Da
Monoisotopic577.012456516Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da
BASm0003296L-ribulose 5-phosphateC5H9O8PChemical structure of L-ribulose 5-phosphateNot available
Average228.094Da
Monoisotopic228.0046014Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da

Displaying 1–10 of 20 metabolites