Helicobacter pylori SJM180

Gram-negativeSpirillaMotileAerobic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter is a gram-negative, slow-growing organism. H. pylori has importance as a common human pathogen. Helicobacter pylori is composed of a single circular chromosome with 1,667,867 base pairs, containing about 1590 coding regions (TIGR, 2004).Helicobacter is a spiral shaped organism with flagella. It has a potent multisubunit urease enzyme that enables it to survive in acidic pH conditions and colonize the gastric environment (TIGR, 2004). H. pylori utilizes the enzyme urease to convert urea into bicarbonate and ammonia to combat the low acidity of the stomach. The mixing of the two extreme pH levels creates a neutralized protective cloud around the H. pylori, allowing it to survive in the stomach (Helicobacter Foundation, 2004).Helicobacter is able to live in the acidity of the stomach and duodenum, living on the mucus lining of the stomach, causing several health problems for the host (Helicobacter Foundation, 2004). Helicobacter can also be seen in animals such as cheetahs, dogs, cats, and ferrets (J. Solnick et al. 2004).Until the discovery of Helicobacter in 1982, ulcers were thought to be caused by stress. Now it is known that ulcers, in addition to gastritis, are caused by a bacterial infection of H. pylori. Though relatively easy to treat with antibiotics, H. pylori can be a risk factor for gastric cancer if it becomes a long-term infection (D. J. Kelly, 2004).The body's natural defenses cannot combat H. pylori because white and killer T cells cannot easily get through the stomach lining. The defense cells eventually die, spilling their superoxide radicals on stomach linig cells, on which H. pylori can feed (Helicobacter Foundation, 2004). (From http://microbewiki.kenyon.edu/index.php/Helicobacter) (MicrobeWiki: Helicobacter)

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainSJM180

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori SJM180
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityYes

Genome Summary

Helicobacter pylori SJM180


Gene Summary

Adenine Count

505273 bp

Thymine Count

507811 bp

Guanine Count

320507 bp

Cytosine Count

324459 bp

Genome Length

1658051 bp

Protein-coding Genes

1537 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
transcription antitermination factor nusbHPSJM_RS00005Not Available-11 - 42715419.9
6,7-dimethyl-8-ribityllumazine synthaseHPSJM_RS00010Not Available-429 - 89916944.6
3-deoxy-8-phosphooctulonate synthaseHPSJM_RS00015Not Available-909 - 173930227.5
carbonic anhydraseHPSJM_RS00020Not Available-1726 - 239125779.8
orotidine-5'-phosphate decarboxylaseHPSJM_RS00025Not Available+2513 - 319625427.4
pantoate--beta-alanine ligaseHPSJM_RS00030Not Available+3197 - 402731104.0
Trna-gluNot AvailableNot Available+4041 - 4116Not Available
Trna-aspNot AvailableNot Available+4179 - 4255Not Available
Trna-valNot AvailableNot Available+4296 - 4371Not Available
Trna-gluNot AvailableNot Available+4413 - 4487Not Available

Displaying genes 1 – 10 of 1582 in total

Metabolites

103 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da

Displaying 1–10 of 103 metabolites