Deinococcus gobiensis I-0

spherefacultative aerobe/anaerobe

Kingdom

Thermotogati

Phylum

Deinococcota

Class

Deinococci

Order

Deinococcales

Family

Deinococcaceae

Genus

Deinococcus

Description

Deinococcus gobiensis I-0 is a Gram-positive, spherical bacterium characterized by its facultative anaerobic metabolism and the ability to thrive optimally at a temperature of 29.0°C. As a non-spore-forming organism, it exhibits a unique resilience in various environmental conditions, allowing it to adapt to both aerobic and anaerobic settings. The spherical morphology of D. gobiensis I-0 may contribute to its survival strategies, potentially enhancing its surface area for nutrient absorption and interactions with other microorganisms. This bacterium's facultative lifestyle suggests it can efficiently utilize available oxygen while also being able to ferment substrates in low-oxygen environments, which could be advantageous in fluctuating ecological niches. The adaptability to both oxygen-rich and oxygen-poor conditions may play a significant role in its ecological interactions, possibly allowing it to inhabit diverse environments where oxygen levels vary. The implications of these traits could be profound, as they may enable D. gobiensis I-0 to participate in complex microbial communities, contributing to nutrient cycling and influencing the dynamics of microbial ecosystems. Further exploration of its metabolic pathways and interactions within its habitat may provide insights into its role in biogeochemical processes.

Taxonomy

KingdomThermotogati
PhylumDeinococcota
ClassDeinococci
OrderDeinococcales
FamilyDeinococcaceae
GenusDeinococcus
SpeciesDeinococcus gobiensis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
Shapesphere
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

456832 bp

Thymine Count

459149 bp

Guanine Count

1108857 bp

Cytosine Count

1112301 bp

Genome Length

3137147 bp

Protein-coding Genes

2975 genes

Non-Coding Genes

82 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
nadph:quinone reductaseDGO_RS10285Not Available+2180202 - 218118834550.0
imidazole glycerol phosphate synthase subunit hishDGO_RS10290Not Available-2181223 - 218185522066.4
hypothetical proteinDGO_RS10295Not Available-2181852 - 218270030103.1
imidazoleglycerol-phosphate dehydratase hisbDGO_RS10300Not Available-2182703 - 218329021119.2
single-stranded dna-binding protein ddraDGO_RS10305Not Available+2183403 - 218399922065.3
methyltransferase domain-containing proteinDGO_RS10310Not Available+2184203 - 218498228001.2
hypothetical proteinDGO_RS10315Not Available+2185041 - 21852266600.02
atp-dependent helicase hrpbDGO_RS10320Not Available-2185272 - 218779189781.1
ykva family proteinDGO_RS10325Not Available-2187769 - 218817915074.9
had family hydrolaseDGO_RS10330Not Available-2188176 - 218881723227.1

Displaying genes 2091 – 2100 of 4321 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

16 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da

Displaying 1–10 of 16 metabolites