Pantoea vagans C9-1

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Pantoea

Description

Pantoea vagans (strain C9-1) is a Gram-negative enterobacterial plant epiphyte isolated from apple (Malus x domestica "Jonathan", MI, USA). P. vagans is an important biocontrol agent that is registered in the United States and Canada as Blight Ban C9-1. It is one of the most effective commercial agents against fire blight, a major threat to global pome fruit production caused by the related enterobacterium Erwinia amylovora. Applied during bloom, P. vagans provides effective disease control, similar to oxytetracycline and slightly lower than streptomycin treatments. It is generally considered as nonpathogenic, because it lacks virulence determinants such as type III secretion systems (T3SS), while some contain a T3SS described as a nonpathogenic type. Several Pantoea species are yellow pigmented due to production of carotenoids and the carotenoid biosynthesis is encoded on plasmid pPag3. (Adapted from PMID: 20952567 and 20487014). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusPantoea
SpeciesPantoea vagans
StrainC9-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Pantoea vagans C9-1
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Malus x domestica
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Pantoea vagans C9-1

Accession NumberNC_014561.1

Gene Summary

Adenine Count

39838 bp

Thymine Count

39186 bp

Guanine Count

44283 bp

Cytosine Count

44676 bp

Genome Length

167983 bp

Protein-coding Genes

145 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
23s ribosomal rnaNot AvailableNot Available+3023070 - 3025978Not Available
Trna-gluNot AvailableNot Available+3026209 - 3026283Not Available
16s ribosomal rnaNot AvailableNot Available+3026372 - 3027911Not Available
gamma carbonic anhydrase family proteinPVAG_RS18000Not Available+3028403 - 302895719866.9
duf1488 domain-containing proteinPVAG_RS18005Not Available-3028924 - 30291819754.28
shikimate dehydrogenasePVAG_RS18010Not Available-3029178 - 302999628960.5
l-threonylcarbamoyladenylate synthase type 1 tsacPVAG_RS18015Not Available-3030000 - 303057220781.9
topoisomerase dna-binding c4 zinc finger domain-containing proteinPVAG_RS18020Not Available-3030576 - 303112419861.9
duf494 family protein smgPVAG_RS18025Not Available-3031149 - 303162218469.9
dna-protecting protein dpraPVAG_RS18030Not Available-3031594 - 303271840390.2

Displaying genes 3511 – 3520 of 4595 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites