Pantoea vagans C9-1

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Pantoea

Description

Pantoea vagans (strain C9-1) is a Gram-negative enterobacterial plant epiphyte isolated from apple (Malus x domestica "Jonathan", MI, USA). P. vagans is an important biocontrol agent that is registered in the United States and Canada as Blight Ban C9-1. It is one of the most effective commercial agents against fire blight, a major threat to global pome fruit production caused by the related enterobacterium Erwinia amylovora. Applied during bloom, P. vagans provides effective disease control, similar to oxytetracycline and slightly lower than streptomycin treatments. It is generally considered as nonpathogenic, because it lacks virulence determinants such as type III secretion systems (T3SS), while some contain a T3SS described as a nonpathogenic type. Several Pantoea species are yellow pigmented due to production of carotenoids and the carotenoid biosynthesis is encoded on plasmid pPag3. (Adapted from PMID: 20952567 and 20487014). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusPantoea
SpeciesPantoea vagans
StrainC9-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Pantoea vagans C9-1
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Malus x domestica
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Pantoea vagans C9-1

Accession NumberNC_014561.1

Gene Summary

Adenine Count

39838 bp

Thymine Count

39186 bp

Guanine Count

44283 bp

Cytosine Count

44676 bp

Genome Length

167983 bp

Protein-coding Genes

145 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
type ii toxin-antitoxin system rele/pare family toxinPVAG_RS06310Not Available+509986 - 51077329075.5
abc transporter substrate-binding proteinPVAG_RS06315Not Available+510796 - 51168331212.7
amino acid abc transporter permeasePVAG_RS06320Not Available+511680 - 51262735036.2
amino acid abc transporter atp-binding proteinPVAG_RS06325Not Available+512624 - 51339428282.4
twin-arginine translocase subunit tatePVAG_RS06330Not Available+513487 - 5136907112.75
lipoyl synthasePVAG_RS06335Not Available-513812 - 51477736047.7
lipoyl(octanoyl) transferase lipbPVAG_RS06340Not Available-514947 - 51560624341.3
duf493 family protein ybedPVAG_RS06345Not Available-515687 - 5159509938.01
d-alanyl-d-alanine carboxypeptidase dacaPVAG_RS06350Not Available-516051 - 51726244350.3
endolytic peptidoglycan transglycosylase rlpaPVAG_RS06355Not Available-517394 - 51849137564.8

Displaying genes 1281 – 1290 of 4595 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites