Pantoea vagans C9-1

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Pantoea

Description

Pantoea vagans (strain C9-1) is a Gram-negative enterobacterial plant epiphyte isolated from apple (Malus x domestica "Jonathan", MI, USA). P. vagans is an important biocontrol agent that is registered in the United States and Canada as Blight Ban C9-1. It is one of the most effective commercial agents against fire blight, a major threat to global pome fruit production caused by the related enterobacterium Erwinia amylovora. Applied during bloom, P. vagans provides effective disease control, similar to oxytetracycline and slightly lower than streptomycin treatments. It is generally considered as nonpathogenic, because it lacks virulence determinants such as type III secretion systems (T3SS), while some contain a T3SS described as a nonpathogenic type. Several Pantoea species are yellow pigmented due to production of carotenoids and the carotenoid biosynthesis is encoded on plasmid pPag3. (Adapted from PMID: 20952567 and 20487014). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusPantoea
SpeciesPantoea vagans
StrainC9-1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Pantoea vagans C9-1
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Malus x domestica
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Pantoea vagans C9-1

Accession NumberNC_014561.1

Gene Summary

Adenine Count

39838 bp

Thymine Count

39186 bp

Guanine Count

44283 bp

Cytosine Count

44676 bp

Genome Length

167983 bp

Protein-coding Genes

145 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinPVAG_RS23865Not Available-377045 - 3771975543.85
acp phosphodiesterasePVAG_RS05645Not Available-377244 - 37782522560.1
trna preq1(34) s-adenosylmethionine ribosyltransferase-isomerase queaPVAG_RS05650Not Available+377929 - 37899939039.7
trna guanosine(34) transglycosylase tgtPVAG_RS05655Not Available+379078 - 38022643569.2
preprotein translocase subunit yajcPVAG_RS05660Not Available+380226 - 38055811786.6
protein translocase subunit secdPVAG_RS05665Not Available+380584 - 38243166578.0
protein translocase subunit secfPVAG_RS05670Not Available+382442 - 38341034990.4
duf3251 domain-containing proteinPVAG_RS05675Not Available-383470 - 38404820258.2
peptidoglycan-binding protein lysmPVAG_RS05680Not Available-384065 - 38450215769.7
transcriptional regulator nrdrPVAG_RS05685Not Available+384689 - 38513817055.6

Displaying genes 1141 – 1150 of 4595 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites