Novosphingobium sp. PP1Y

Gram-negativeBacilliMotileObligate aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. PP1Y is a marine bacteria specifically adapted to use fuels as energy source. It is able to grow on a wide range of mono-, poly- and heterocyclic aromatic hydrocarbons. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. PP1Y
Strainsp. PP1Y

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate aerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. PP1Y

Accession NumberNC_015579.1

Gene Summary

Adenine Count

37629 bp

Thymine Count

37847 bp

Guanine Count

58360 bp

Cytosine Count

58267 bp

Genome Length

192103 bp

Protein-coding Genes

179 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
virb3 family type iv secretion system proteinPP1Y_RS07535Not Available+284576 - 2848459603.85
conjugal transfer protein trbePP1Y_RS07540Not Available+284842 - 28729889243.5
p-type conjugative transfer protein trbjPP1Y_RS07545Not Available+287295 - 28801425470.2
putative entry exclusion protein trbk-altPP1Y_RS07550Not Available+288016 - 2882709056.67
p-type conjugative transfer protein trblPP1Y_RS07555Not Available+288267 - 28954742153.4
conjugal transfer protein trbfPP1Y_RS07560Not Available+289569 - 29025225344.0
p-type conjugative transfer protein trbgPP1Y_RS07565Not Available+290249 - 29116633818.3
trbi/virb10 family proteinPP1Y_RS07570Not Available+291163 - 29248846040.4
duf2274 domain-containing proteinPP1Y_RS07575Not Available+292485 - 2927128200.05
lysr family transcriptional regulatorPP1Y_RS07580Not Available-292700 - 29359633175.5

Displaying genes 571 – 580 of 4953 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites