Novosphingobium sp. PP1Y

Gram-negativeBacilliMotileObligate aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. PP1Y is a marine bacteria specifically adapted to use fuels as energy source. It is able to grow on a wide range of mono-, poly- and heterocyclic aromatic hydrocarbons. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. PP1Y
Strainsp. PP1Y

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsObligate aerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. PP1Y

Accession NumberNC_015579.1

Gene Summary

Adenine Count

37629 bp

Thymine Count

37847 bp

Guanine Count

58360 bp

Cytosine Count

58267 bp

Genome Length

192103 bp

Protein-coding Genes

179 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
cytochrome-c oxidase, cbb3-type subunit iiPP1Y_RS07000Not Available+187245 - 18799427808.9
cbb3-type cytochrome c oxidase subunit 3PP1Y_RS07005Not Available+187991 - 1881616434.82
cytochrome-c oxidase, cbb3-type subunit iiiPP1Y_RS07010Not Available+188154 - 18910133559.2
cytochrome c oxidase accessory protein ccogPP1Y_RS07015Not Available+189138 - 19059554593.0
fixh family proteinPP1Y_RS07020Not Available+190592 - 19105016820.1
heavy metal translocating p-type atpasePP1Y_RS07025Not Available+191047 - 19319474294.0
cbb3-type cytochrome oxidase assembly protein ccosPP1Y_RS07030Not Available+193191 - 1933585904.08
hypothetical proteinPP1Y_RS07035Not Available+193355 - 1935767319.04
oxygen-independent coproporphyrinogen iii oxidasePP1Y_RS07040Not Available+193609 - 19492248097.6
pilz domain-containing proteinPP1Y_RS07045Not Available-194942 - 19521410094.9

Displaying genes 461 – 470 of 4953 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites