[Enterobacter] lignolyticus SCF1

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Pluralibacter

Description

Enterobacter lignolyticus SCF1 is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This species is nonsporulating and exhibits facultative anaerobic metabolism, allowing it to thrive in varying oxygen conditions. Its habitat primarily includes soil, where it likely interacts with a diverse array of microbial communities and contributes to soil ecology. The ability of E. lignolyticus SCF1 to adapt to both aerobic and anaerobic environments suggests a versatile metabolic capability, which may involve the degradation of complex organic compounds. Given the genus Enterobacter’s known associations with the degradation of lignocellulosic materials, E. lignolyticus SCF1 may play a role in the breakdown of plant-derived substances within its soil habitat. This could have implications for nutrient cycling and the maintenance of soil health, as the decomposition of organic material is crucial for the replenishment of soil nutrients. Understanding the metabolic pathways and ecological roles of E. lignolyticus SCF1 could provide insights into its potential applications in bioremediation or agricultural practices aimed at enhancing soil quality and promoting sustainable land use. Further research into its interactions with other soil microbes and its specific metabolic capabilities will be essential for elucidating its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusPluralibacter
Species[Enterobacter] lignolyticus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

[Enterobacter] lignolyticus SCF1

Accession NumberNC_014618.1

Gene Summary

Adenine Count

1032570 bp

Thymine Count

1036600 bp

Guanine Count

1372293 bp

Cytosine Count

1372586 bp

Genome Length

4814049 bp

Protein-coding Genes

4350 genes

Non-Coding Genes

208 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hemolysin/hemagglutinin-like protein heca precursorENTCL_RS24005Not Available-4671078 - 467196831874.2
hypothetical proteinENTCL_RS21660Not Available-4672161 - 467253514732.4
hypothetical proteinENTCL_RS24010Not Available-4672532 - 467319723821.0
hypothetical proteinENTCL_RS23840Not Available-4673269 - 467382321603.6
hypothetical proteinENTCL_RS21675Not Available-4673807 - 467458928159.3
type ii toxin-antitoxin system rele/pare family toxinENTCL_RS21680Not Available-4674909 - 467521411341.8
dna-damage-inducible protein jENTCL_RS23925Not Available-4675211 - 467549811130.0
hypothetical proteinENTCL_RS23535Not Available-4675509 - 467624627633.0
duf596 domain-containing proteinENTCL_RS23355Not Available-4676793 - 467715813736.5
venn motif pre-toxin domain-containing proteinENTCL_RS21695Not Available-4677155 - 467918869761.3

Displaying genes 4421 – 4430 of 4558 in total

Pathways

23 pathways

Metabolites

88 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0012554N-acetyl-beta-D-glucosaminyl-(1->4)-1,6-anhydro-N-acetyl-beta-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate-D-alanineC37H57N7O20Not availableNot available
Average919.893Da
Monoisotopic919.366934423Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014058Myristic acidC14H28O2Chemical structure of Myristic acid544-63-8
Average228.3709Da
Monoisotopic228.20893014Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da

Displaying 1–10 of 88 metabolites