Erwinia amylovora CFBP1430

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Erwinia

Description

The genus Erwinia currently contains both pathogenic and nonpathogenic bacteria. E.amylovora is a pathogen which causes fire blight, a devastating disease of Rosaceae, which poses a major threat to apple, pear and quince. Fire blight can develop very rapidly and results in scorched symptoms which can kill an entire orchard in a year. The bacterium originated in North America and has spread to other continents; from Europe an eastward advance is threatening the native origin of apple germplasm in Central Asia. It is spread by flower-foraging insects, especially honeybees, in what is thought to be a passive association.This highly virulent strain, CFBP1430, was isolated from hawthorn (Crataegus sp.) in 1972 in France. It is over 99.99% identical to an American isolate ATCC 49946 (ERWAE), suggesting there has been minimal evolution since the global dispersion of E.amylovora. There has however been a large-scale rearrangement of the genome resulting in a position exchange of 2 large portions of the chromosome. Additionally ERWAE has a second larger plasmid (pEA72) associated with it. Interestingly 1 type III secretion system has high homology to the insect endosymbiont Sodalis glossidinius str. morsitans (SODGM) perhaps suggesting a closer insect association beyond the known passive dispersal. Comparison with pathogenic E.pyrifoliae and the epiphyte E.tasmaniensis will hopefully shed light on the mechanisms of virulence and host range and provide information to help combat this devastating pathogen (adapted from PMID 20118253 and 20192826). (HAMAP: ERWAC)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusErwinia
SpeciesErwinia amylovora
StrainCFBP1430

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Erwinia amylovora CFBP1430
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Erwinia amylovora CFBP1430


Gene Summary

Adenine Count

7096 bp

Thymine Count

6967 bp

Guanine Count

7206 bp

Cytosine Count

6990 bp

Genome Length

28259 bp

Protein-coding Genes

29 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
replication initiation proteinEAMY_RS34425Not Available+13 - 99037492.4
hypothetical proteinEAMY_RS36805Not Available-1691 - 18254567.44
h-ns family nucleoid-associated regulatory proteinEAMY_RS34430Not Available-2725 - 312915158.0
aaa family atpaseEAMY_RS35580Not Available-3890 - 453522537.9
putrescine utilization regulator ptrrEAMY_RS34440Not Available-4770 - 562731221.6
aldehyde dehydrogenase family proteinEAMY_RS34445Not Available+5770 - 715849492.7
methyl-accepting chemotaxis proteinEAMY_RS34450Not Available-7441 - 899755504.7
vf530 family dna-binding proteinEAMY_RS34455Not Available-9346 - 963010895.0
multiprotein-bridging factor 1 family proteinEAMY_RS34460Not Available+9843 - 1013911049.5
type ii toxin-antitoxin system hipa family toxinEAMY_RS34465Not Available+10136 - 1141947757.1

Displaying genes 1 – 10 of 3508 in total

Metabolites

1781 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da

Displaying 1–10 of 1781 metabolites