Pseudomonas syringae pv. avii

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas syringae pv. avii is a Gram-negative, rod-shaped bacterium that typically exists as single cells. This microbe is classified as a heterotroph, deriving its energy from organic compounds. It is an aerobic organism, indicating its requirement for oxygen to sustain metabolic processes. Pseudomonas syringae pv. avii has been identified in a variety of habitats, which suggests its adaptability and potential for widespread distribution in diverse environments. The presence of Pseudomonas syringae pv. avii in multiple habitats may reflect its resilience and ecological versatility, allowing it to thrive in various niches. The organism's aerobic nature and heterotrophic lifestyle further indicate its role in nutrient cycling within these ecosystems. Understanding the specific ecological roles and interactions of Pseudomonas syringae pv. avii can provide insights into microbial dynamics and the functioning of the environments it inhabits.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas syringae
Strainpv. avii

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas syringae pv. avii
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Gene Summary

Adenine Count

1266679 bp

Thymine Count

1258585 bp

Guanine Count

1793406 bp

Cytosine Count

1801488 bp

Genome Length

6120158 bp

Protein-coding Genes

5333 genes

Non-Coding Genes

211 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Gp58C6H38_RS00170Not Available+35613 - 3656335261.4
hypothetical proteinC6H38_RS00175Not Available+36770 - 3707311049.1
Isbmu23 transposaseC6H38_RS00180Not Available+37348 - 3832536467.8
hypothetical proteinC6H38_RS00185Not Available+38758 - 3920116921.0
Isppu15, transposase orf2C6H38_RS00190Not Available-39247 - 4077958025.0
Isppu13, transposase orf1C6H38_RS00195Not Available-40797 - 4115614204.4
lysr family transcriptional regulatorC6H38_RS00200Not Available-41265 - 413754008.94
Isbmu23 transposaseC6H38_RS00205Not Available-41549 - 4252636467.8
hypothetical proteinC6H38_RS00210Not Available-42637 - 428377790.07
Isppu13, transposase orf1C6H38_RS00215Not Available+42922 - 4328114204.4

Displaying genes 1 – 10 of 5986 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

11 records
Metabolite IDMetabolite nameStructureCAS number
BASm00008001,8-diazacyclotetradecane-2,9-dioneC12H22N2O2Chemical structure of 1,8-diazacyclotetradecane-2,9-dioneNot available
Average226.32Da
Monoisotopic226.168127956Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0003333(2R)-3-phosphoglycerateC3H4O7PChemical structure of (2R)-3-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003721N-(6-aminohexanoyl)-6-aminohexanoateC12H24N2O3Chemical structure of N-(6-aminohexanoyl)-6-aminohexanoateNot available
Average244.335Da
Monoisotopic244.1786926Da
BASm00045794-O-beta-D-mannopyranosyl-D-glucopyranoseC12H22O11Chemical structure of 4-O-beta-D-mannopyranosyl-D-glucopyranoseNot available
Average342.297Da
Monoisotopic342.116211528Da

Displaying 1–10 of 11 metabolites