Leadbetterella byssophila DSM 17132

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Leadbetterellaceae

Genus

Leadbetterella

Description

Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) is a strictly aerobic Gram-negative bacterium isolated from rom cotton-waste compounds used for the cultivation of the oyster mushroom in South Korea. Cells are rod-shaped with a width of 0.6-0.9 mm and length of 2-7 mm. The colonies are circular, 1-2 mm in diameter, smooth, light orange, shiny and convex with entire margin when grown on TSA. With prolonged incubation, colonies become dark orange. Gliding motility is not observed. L. byssophila grows at temperatures of 15-45 degrees Celsius and at a pH range of 6.0-8.0. It grows in the presence of 1% (w/v) NaCl, but not at 3% NaCl. Growth is observed in 0.5% yeast extract broth. It is able to degrade aesculin, gelatin, starch, tyrosine and Tween 20, but not casein, cellulose, chitin, DNA or Tweens 40 and 80. It is sensitive to ampicillin, carbenicillin, lincomycin, streptomycin and tetracycline. Antibiotic resistance is observed to benzylpenicillin, gentamicin, neomycin, oleandomycin and polymyxin B. (Adapted from PMID: 16280486). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyLeadbetterellaceae
GenusLeadbetterella
SpeciesLeadbetterella byssophila
StrainDSM 17132

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Leadbetterella byssophila DSM 17132
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature29
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy source Chemoorganotroph
PathogenicityNo

Genome Summary

Leadbetterella byssophila DSM 17132


Gene Summary

Adenine Count

1202284 bp

Thymine Count

1216716 bp

Guanine Count

815359 bp

Cytosine Count

825294 bp

Genome Length

4059653 bp

Protein-coding Genes

3571 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
chromosomal replication initiator protein dnaaLBYS_RS00010Not Available+93 - 149053520.8
zinc-binding alcohol dehydrogenase family proteinLBYS_RS00015Not Available+1490 - 248835741.1
laci family dna-binding transcriptional regulatorLBYS_RS00020Not Available-2459 - 347237641.1
susc/raga family tonb-linked outer membrane proteinLBYS_RS00030Not Available+3818 - 6790109374.0
ragb/susd family nutrient uptake outer membrane proteinLBYS_RS00035Not Available+6796 - 842160926.8
susc/raga family tonb-linked outer membrane proteinLBYS_RS00040Not Available+8641 - 11721114112.0
ragb/susd family nutrient uptake outer membrane proteinLBYS_RS00045Not Available+11724 - 1331658922.8
hypothetical proteinLBYS_RS00050Not Available+13361 - 1511265986.6
duf4861 domain-containing proteinLBYS_RS00055Not Available+15109 - 1636547383.2
glycoside hydrolase family 105 proteinLBYS_RS00060Not Available+16362 - 1768149381.4

Displaying genes 1 – 10 of 3624 in total

Metabolites

294 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da

Displaying 1–10 of 294 metabolites