Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| atp synthase f0 subcomplex a subunit | BXY66_0079 | Not Available | + | 72344 - 73102 | 27326.2 |
| atp synthase f0 subcomplex c subunit | BXY66_0080 | Not Available | + | 73155 - 73379 | 7162.83 |
| f-type h+-transporting atpase subunit b | BXY66_0081 | Not Available | + | 73465 - 74007 | 18738.0 |
| atp synthase f0 subcomplex b subunit | BXY66_0082 | Not Available | + | 74013 - 74573 | 19987.0 |
| hypothetical protein | BXY66_0083 | Not Available | + | 74700 - 75095 | 14310.0 |
| ribonuclease t2 | BXY66_0084 | Not Available | - | 75102 - 75740 | 23955.2 |
| hypothetical protein | BXY66_0085 | Not Available | + | 75895 - 76650 | 27619.4 |
| dna polymerase-3 subunit epsilon | BXY66_0086 | Not Available | - | 76718 - 77317 | 21706.8 |
| dna replication and repair protein recr | BXY66_0087 | Not Available | - | 77376 - 77966 | 20876.2 |
| hypothetical protein | BXY66_0088 | Not Available | - | 78036 - 78380 | 12176.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
