Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia isoporae str. DSM 26433
Accession NumberSMGR00000000.1
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| aspartate semialdehyde dehydrogenase | BXY66_0019 | Not Available | - | 17613 - 18635 | 37458.7 |
| putative mfs family arabinose efflux permease | BXY66_0020 | Not Available | - | 18768 - 19940 | 41291.5 |
| protein of unknown function (duf3095) | BXY66_0021 | Not Available | + | 20117 - 21256 | 41288.1 |
| amino acid/amide abc transporter membrane protein 2 (haat family) | BXY66_0022 | Not Available | - | 21278 - 22339 | 37513.5 |
| amino acid/amide abc transporter membrane protein 1 (haat family) | BXY66_0023 | Not Available | - | 22342 - 23373 | 36329.7 |
| amino acid/amide abc transporter atp-binding protein 2 (haat family) | BXY66_0024 | Not Available | - | 23435 - 24157 | 26144.0 |
| amino acid/amide abc transporter atp-binding protein 1 (haat family) | BXY66_0025 | Not Available | - | 24150 - 24926 | 28059.8 |
| amino acid/amide abc transporter substrate-binding protein (haat family) | BXY66_0026 | Not Available | - | 25009 - 26184 | 42186.2 |
| aromatic-l-amino-acid decarboxylase | BXY66_0027 | Not Available | - | 26326 - 27735 | 52102.9 |
| marr family transcriptional regulator | BXY66_0028 | Not Available | + | 27921 - 28289 | 13796.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.