Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia isoporae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Shimia isoporae str. DSM 26433
Accession NumberSMGR00000000.1
Gene Summary
Adenine Count
920505 bp
Thymine Count
914254 bp
Guanine Count
1190771 bp
Cytosine Count
1207235 bp
Genome Length
4232765 bp
Protein-coding Genes
4082 genes
Non-Coding Genes
54 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c556 | BXY66_0009 | Not Available | - | 7122 - 7544 | 14787.0 |
| protein imub | BXY66_0010 | Not Available | + | 7662 - 9323 | 60710.2 |
| nadph:quinone reductase-like zn-dependent oxidoreductase | BXY66_0011 | Not Available | - | 9388 - 10470 | 38347.7 |
| uncharacterized protein duf2794 | BXY66_0012 | Not Available | + | 10795 - 11142 | 13207.3 |
| guanidinopropionase | BXY66_0013 | Not Available | - | 11267 - 12226 | 34503.0 |
| cell wall-associated nlpc family hydrolase | BXY66_0014 | Not Available | - | 12219 - 13112 | 32134.9 |
| leucyl aminopeptidase | BXY66_0015 | Not Available | - | 13109 - 14518 | 49194.0 |
| hypothetical protein | BXY66_0016 | Not Available | - | 14612 - 14992 | 14436.4 |
| hypothetical protein | BXY66_0017 | Not Available | - | 15240 - 15377 | 5105.17 |
| uncharacterized protein (tigr02231 family) | BXY66_0018 | Not Available | - | 15785 - 17407 | 58574.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.