Edwardsiella ictaluri 93-146

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Hafniaceae

Genus

Edwardsiella

Description

The disease caused by Edwardsiella ictaluri, enteric septicemia of catfish (ESC), is the most economically important disease of farm-raised channel catfish, which is the largest aquaculture industry in the United States. Functional predictions for the ORFs indicate that the physiology of E. ictaluri is similar in many respects to other members of the Enterobacteriaceae, including Escherichia coli O157:H7, Salmonella enterica, Yersinia pestis, and Erwinia carotovora. However, E. ictaluri does have some unique features; for example, its genome contains a higher number of genes involved in DNA recombination, replication, and repair, protein stabilization and two-component regulatory systems. This may indicate that E. ictaluri is adapted to survival in more stressful or diverse environments than other Enterobacteriaceae species. The genome has 203 transposable elements, which is considerably higher than the other four species. This is surprising because E. ictaluri only has one serovar and is generally considered to be phenotypically homogenous (adapted from http://www.miangel.msstate.edu/research/eigenome.html). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyHafniaceae
GenusEdwardsiella
SpeciesEdwardsiella ictaluri
Strain93-146

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Edwardsiella ictaluri 93-146
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Edwardsiella ictaluri 93-146

Accession NumberNC_012779.2

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3371 genes

Non-Coding Genes

253 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Issod6, transposaseNT01EI_RS19110Not Available+1913794 - 191460230777.5
TransposaseNT01EI_RS08690Not Available+1914599 - 191580745631.8
Hypothetical proteinNT01EI_RS08695Not Available-1916311 - 1924137286883.0
TransposaseNT01EI_RS08700Not Available-1924378 - 192558645640.9
Hypothetical proteinNT01EI_RS08705Not Available-1925635 - 192701151675.4
Hypothetical proteinNT01EI_RS20465Not Available-1927035 - 19272025113.14
Hypothetical proteinNT01EI_RS08715Not Available-1927295 - 192767514000.4
Hypothetical proteinNT01EI_RS08720Not Available-1927763 - 192834120243.4
Hypothetical proteinNT01EI_RS08725Not Available-1928349 - 192872014046.4
Tail fiber proteinNT01EI_RS08730Not Available-1928717 - 193025554962.6

Displaying genes 1 – 10 of 3624 in total

Pathways

23 pathways

Metabolites

174 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003631(1R,6R)-6-hydroxy-2-succinyl-cyclohexa-2,4-diene-1-carboxylateC11H10O6Chemical structure of (1R,6R)-6-hydroxy-2-succinyl-cyclohexa-2,4-diene-1-carboxylateNot available
Average238.196Da
Monoisotopic238.0488352Da
BASm0003645UDP-4-amino-4-deoxy-beta-L-arabinoseC14H22N3O15P2Chemical structure of UDP-4-amino-4-deoxy-beta-L-arabinoseNot available
Average534.2831Da
Monoisotopic534.0526151Da
BASm0003657N-acetyl-D-muramate 6-phosphateC11H17NO11PChemical structure of N-acetyl-D-muramate 6-phosphateNot available
Average370.228Da
Monoisotopic370.0555681Da
BASm00036954-phospho-D-erythronateC4H6O8PChemical structure of 4-phospho-D-erythronateNot available
Average213.059Da
Monoisotopic212.9816749Da
BASm00037365-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylateC14H13O9Chemical structure of 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylateNot available
Average325.251Da
Monoisotopic325.057602738Da
BASm0003763(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateC11H12NO6PChemical structure of (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateNot available
Average285.1898Da
Monoisotopic285.0402236Da
BASm00037914-deoxy-4-formamido-alpha-L-arabinopyranosyl di-trans,octa-cis-undecaprenyl phosphateC61H99NO8PChemical structure of 4-deoxy-4-formamido-alpha-L-arabinopyranosyl di-trans,octa-cis-undecaprenyl phosphateNot available
Average1005.436Da
Monoisotopic1004.71137973Da
BASm0003896ADP-D-glycero-beta-D-manno-heptoseC17H25N5O16P2Chemical structure of ADP-D-glycero-beta-D-manno-heptoseNot available
Average617.355Da
Monoisotopic617.078250901Da
BASm0003926sirohemeC42H36FeN4O16Not available52553-42-1
Average908.611Da
Monoisotopic908.151956Da
BASm0003934Co-precorrin-5BC43H42CoN4O16Chemical structure of Co-precorrin-5BNot available
Average929.759Da
Monoisotopic929.197164Da

Displaying 41–50 of 174 metabolites