Edwardsiella ictaluri 93-146

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Hafniaceae

Genus

Edwardsiella

Description

The disease caused by Edwardsiella ictaluri, enteric septicemia of catfish (ESC), is the most economically important disease of farm-raised channel catfish, which is the largest aquaculture industry in the United States. Functional predictions for the ORFs indicate that the physiology of E. ictaluri is similar in many respects to other members of the Enterobacteriaceae, including Escherichia coli O157:H7, Salmonella enterica, Yersinia pestis, and Erwinia carotovora. However, E. ictaluri does have some unique features; for example, its genome contains a higher number of genes involved in DNA recombination, replication, and repair, protein stabilization and two-component regulatory systems. This may indicate that E. ictaluri is adapted to survival in more stressful or diverse environments than other Enterobacteriaceae species. The genome has 203 transposable elements, which is considerably higher than the other four species. This is surprising because E. ictaluri only has one serovar and is generally considered to be phenotypically homogenous (adapted from http://www.miangel.msstate.edu/research/eigenome.html). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyHafniaceae
GenusEdwardsiella
SpeciesEdwardsiella ictaluri
Strain93-146

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Edwardsiella ictaluri 93-146
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Edwardsiella ictaluri 93-146

Accession NumberNC_012779.2

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3371 genes

Non-Coding Genes

253 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Issod6, transposaseNT01EI_RS19110Not Available+1913794 - 191460230777.5
TransposaseNT01EI_RS08690Not Available+1914599 - 191580745631.8
Hypothetical proteinNT01EI_RS08695Not Available-1916311 - 1924137286883.0
TransposaseNT01EI_RS08700Not Available-1924378 - 192558645640.9
Hypothetical proteinNT01EI_RS08705Not Available-1925635 - 192701151675.4
Hypothetical proteinNT01EI_RS20465Not Available-1927035 - 19272025113.14
Hypothetical proteinNT01EI_RS08715Not Available-1927295 - 192767514000.4
Hypothetical proteinNT01EI_RS08720Not Available-1927763 - 192834120243.4
Hypothetical proteinNT01EI_RS08725Not Available-1928349 - 192872014046.4
Tail fiber proteinNT01EI_RS08730Not Available-1928717 - 193025554962.6

Displaying genes 1 – 10 of 3624 in total

Pathways

23 pathways

Metabolites

174 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003346(2R)-2-phosphoglycerateC3H4O7PChemical structure of (2R)-2-phosphoglycerateNot available
Average183.033Da
Monoisotopic182.9711102Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm00034561-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideNot available
Average573.2993Da
Monoisotopic573.0509381Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm00034704-(phosphooxy)-L-threonineC4H8NO7PChemical structure of 4-(phosphooxy)-L-threonineNot available
Average213.083Da
Monoisotopic213.0049358Da
BASm0003491(2S)-2-acetolactateC5H7O4Chemical structure of (2S)-2-acetolactateNot available
Average131.108Da
Monoisotopic131.0349823Da
BASm00034972-C-methyl-D-erythritol 2,4-cyclic diphosphateC5H10O9P2Chemical structure of 2-C-methyl-D-erythritol 2,4-cyclic diphosphate143488-44-2
Average276.075Da
Monoisotopic275.9800049Da
BASm00035255-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideNot available
Average573.303Da
Monoisotopic573.0531333Da
BASm0003537(R)-3-hydroxy-2-oxo-4-phosphooxybutanoateC4H4O8PChemical structure of (R)-3-hydroxy-2-oxo-4-phosphooxybutanoateNot available
Average211.043Da
Monoisotopic210.9660248Da

Displaying 31–40 of 174 metabolites