Edwardsiella ictaluri 93-146

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Hafniaceae

Genus

Edwardsiella

Description

The disease caused by Edwardsiella ictaluri, enteric septicemia of catfish (ESC), is the most economically important disease of farm-raised channel catfish, which is the largest aquaculture industry in the United States. Functional predictions for the ORFs indicate that the physiology of E. ictaluri is similar in many respects to other members of the Enterobacteriaceae, including Escherichia coli O157:H7, Salmonella enterica, Yersinia pestis, and Erwinia carotovora. However, E. ictaluri does have some unique features; for example, its genome contains a higher number of genes involved in DNA recombination, replication, and repair, protein stabilization and two-component regulatory systems. This may indicate that E. ictaluri is adapted to survival in more stressful or diverse environments than other Enterobacteriaceae species. The genome has 203 transposable elements, which is considerably higher than the other four species. This is surprising because E. ictaluri only has one serovar and is generally considered to be phenotypically homogenous (adapted from http://www.miangel.msstate.edu/research/eigenome.html). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyHafniaceae
GenusEdwardsiella
SpeciesEdwardsiella ictaluri
Strain93-146

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Edwardsiella ictaluri 93-146
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Edwardsiella ictaluri 93-146


Gene Summary

Adenine Count

812314 bp

Thymine Count

810320 bp

Guanine Count

1095973 bp

Cytosine Count

1093694 bp

Genome Length

3812301 bp

Protein-coding Genes

3371 genes

Non-Coding Genes

253 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
flagellar transcriptional regulator flhdNT01EI_RS06430Not Available+1429507 - 142985413049.7
yijd family membrane proteinNT01EI_RS06435Not Available+1429856 - 143043622012.8
flagellar motor stator protein motaNT01EI_RS06440Not Available+1430589 - 143149432572.8
yijd family membrane proteinNT01EI_RS06445Not Available+1431491 - 143229730121.7
yijd family membrane proteinNT01EI_RS18995Not Available+1432297 - 143301926331.6
hypothetical proteinNT01EI_RS19500Not Available+1433003 - 14332307986.42
chemotaxis protein cheaNT01EI_RS06455Not Available+1433240 - 143537875817.2
chemotaxis protein chewNT01EI_RS06460Not Available+1435448 - 143594217765.4
methyl-accepting chemotaxis proteinNT01EI_RS06465Not Available+1436121 - 143778859645.3
methyl-accepting chemotaxis proteinNT01EI_RS06470Not Available+1437934 - 143953257997.8

Displaying genes 1501 – 1510 of 3624 in total

Metabolites

1842 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 1842 metabolites