Komagataeibacter medellinensis NBRC 3288

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Acetobacterales

Family

Acetobacteraceae

Genus

Komagataeibacter

Description

**Komagataeibacter medellinensis** NBRC 3288 is a Gram-negative, rod-shaped bacterium notable for its potential applications in biotechnology and material science. As a member of the genus Komagataeibacter, it is characterized by its ability to produce cellulose, a trait that facilitates its use in various industrial processes, including the production of biofilms and biopolymers. The Gram-negative nature of K. medellinensis indicates a thinner peptidoglycan layer and the presence of an outer membrane, which can influence its interaction with other microbial species and its resilience in diverse environments. The rod shape of K. medellinensis is typical of many bacteria within its genus and contributes to its motility and ability to colonize surfaces. This morphological characteristic may also play a role in its metabolic processes, as rod-shaped bacteria often exhibit higher surface area-to-volume ratios compared to coccoid forms, potentially enhancing nutrient uptake. While the ecological niche of K. medellinensis remains to be fully elucidated, its cellulose-producing capability positions it as a crucial player in carbon cycling within its habitat, potentially influencing soil structure and health. The study of K. medellinensis could provide deeper insights into the roles of cellulose-producing microbes in natural ecosystems and their applications in sustainable technologies. This unique combination of traits underscores the importance of further research into the functional capabilities and environmental interactions of this bacterium.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderAcetobacterales
FamilyAcetobacteraceae
GenusKomagataeibacter
SpeciesKomagataeibacter medellinensis
StrainNBRC 3288

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

455 bp

Thymine Count

496 bp

Guanine Count

669 bp

Cytosine Count

598 bp

Genome Length

2218 bp

Protein-coding Genes

3 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

8

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
type ii toxin-antitoxin system relb/dinj family antitoxinGLX_RS16395Not Available+867 - 11309505.37
type ii toxin-antitoxin system yafq family toxinGLX_RS16400Not Available+1117 - 139810898.3
replication/maintenance protein replGLX_RS17900Not Available-1495 - 204019439.4
para family proteinGLX_RS14550Not Available+1 - 102336695.0
parb/repb/spo0j family partition proteinGLX_RS14555Not Available+1023 - 190432703.9
replication initiator protein aGLX_RS14560Not Available+2067 - 281328815.1
lactate dehydrogenaseGLX_RS14565Not Available+3973 - 9072188660.0
parb/repb/spo0j family partition proteinGLX_RS14570Not Available+9250 - 1117569828.2
hypothetical proteinGLX_RS14575Not Available+11358 - 1169612634.1
hypothetical proteinGLX_RS14580Not Available+11689 - 1210214811.4

Displaying genes 1 – 10 of 3394 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

317 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 317 metabolites