Helicobacter bilis ATCC 43879

Gram-negativeMicroaerophile

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

*Helicobacter bilis ATCC 43879* is a Gram-negative, spiral-shaped bacterium that thrives at mesophilic temperatures, categorizing it as a mesophilic microbe. It is a chemoheterotroph, deriving its energy from the consumption of organic compounds, and has been identified as a microaerophile, requiring lower levels of oxygen for optimal growth compared to atmospheric levels. This organism is primarily associated with the gastrointestinal tract of various mammals, particularly rodents, where it can inhabit both the stomach and intestines. Its spiral shape and flagella facilitate mobility in the viscous environment of the gut, allowing it to effectively colonize and establish itself within the host's mucosal lining. As a chemoheterotroph, *H. bilis* utilizes host-derived organic substrates, which it metabolizes for energy and growth, potentially influencing the host's digestive processes and microbiome composition. The microaerophilic nature of *H. bilis* means that it thrives in environments with reduced oxygen tension, characteristic of the gastrointestinal tract, where oxygen availability is limited due to the dense microbial community. This adaptation not only aids in its survival but also can impact the oxygen levels and metabolic activities of other gut microbiota. *Helicobacter bilis* has been studied for its role in gastrointestinal diseases, including its potential involvement in conditions such as gastritis and enteritis. Unlike its cousin, *Helicobacter pylori*, which is widely known for causing gastric ulcers and cancer in humans, *H. bilis* demonstrates unique pathogenicity in certain animal models. There is ongoing research to explore its interactions within the gut microbiome, which may lead to insights into microbial ecology and potential therapeutic strategies for gut-related diseases. Additionally, its relationship with its host's immune response presents a fascinating area for further study, particularly in understanding how microbial communities affect health and disease.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter bilis
StrainATCC 43879

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Helicobacter bilis ATCC 43879
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophile
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter bilis ATCC 43879


Gene Summary

Adenine Count

819609 bp

Thymine Count

826026 bp

Guanine Count

437316 bp

Cytosine Count

440770 bp

Genome Length

2523721 bp

Protein-coding Genes

2269 genes

Non-Coding Genes

40 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinHRAG_00461Not Available-1 - 151856472.0
ribosome-associated gtpase engaHRAG_00462Not Available-1653 - 368376567.2
hypothetical proteinHRAG_00463Not Available-3764 - 430919534.6
hypothetical proteinHRAG_00464Not Available+4682 - 585445312.9
hypothetical proteinHRAG_00465Not Available+5923 - 657625342.6
hypothetical proteinHRAG_00466Not Available+6616 - 712819812.8
hypothetical proteinHRAG_00467Not Available-7472 - 821229086.1
adenosylmethionine-8-amino-7-oxononanoate transaminaseHRAG_00468Not Available-8341 - 962748755.2
8-amino-7-oxononanoate synthaseHRAG_00469Not Available+9714 - 1086843256.2
hypothetical proteinHRAG_00470Not Available+11031 - 1184028142.3

Displaying genes 1 – 10 of 2309 in total

Metabolites

381 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da

Displaying 1–10 of 381 metabolites