Alicycliphilus denitrificans K601

Gram-negativeMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Alicycliphilus

Description

Chlorate contamination of groundwater is a big problem that is often associated with the manufacture and use of explosives and munitions. To clean up chlorate-contaminated areas, some researchers turn to bacteria that can break down these compounds. These microbes can produce oxygen in anaerobic conditions, which can speed up the process of breaking down other compounds that do not degrade quickly in anaerobic environments such as the hydrocarbon benzene. Adding chlorate-reducing bacteria to contaminated, oxygen-poor environments could therefore encourage the growth of other bacteria that need oxygen to break down other compounds found at these sites. Microbes usually need oxygen to break down benzene; in anaerobic environments, the process is very slow. Alicycliphilus denitrificans (strain JCM 14587 / BC) is Gram-negative bacterium which can break down both chlorates and benzene. It produces oxygen while breaking down chlorates, and the oxygen is used to speed up the degradation of benzene in anaerobic conditions. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/41663). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusAlicycliphilus
SpeciesAlicycliphilus denitrificans
StrainK601

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Alicycliphilus denitrificans K601

Accession NumberNC_015423.1

Gene Summary

Adenine Count

15078 bp

Thymine Count

13432 bp

Guanine Count

23437 bp

Cytosine Count

23541 bp

Genome Length

75488 bp

Protein-coding Genes

91 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
is66 family transposaseALIDE2_RS00985Not Available-222726 - 22424056503.7
is66 family insertion sequence element accessory protein tnpbALIDE2_RS00990Not Available-224323 - 22465511905.5
is66-like element accessory protein tnpaALIDE2_RS00995Not Available-224652 - 22508015353.6
is21 family transposaseALIDE2_RS01000Not Available+225094 - 22647052199.2
is21-like element helper atpase istbALIDE2_RS01005Not Available+226463 - 22727830078.3
shikimate kinaseALIDE2_RS01010Not Available-232822 - 23336420412.7
yihy/virulence factor brkb family proteinALIDE2_RS01015Not Available+233470 - 23436931287.2
glycine zipper 2tm domain-containing proteinALIDE2_RS01020Not Available+234495 - 23521124202.6
ferredoxin--nadp reductaseALIDE2_RS01025Not Available-235268 - 23604129310.4
abc transporter substrate-binding proteinALIDE2_RS01030Not Available+236234 - 23743043281.0

Displaying genes 381 – 390 of 4902 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites