Alicycliphilus denitrificans K601

Gram-negativeMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Alicycliphilus

Description

Chlorate contamination of groundwater is a big problem that is often associated with the manufacture and use of explosives and munitions. To clean up chlorate-contaminated areas, some researchers turn to bacteria that can break down these compounds. These microbes can produce oxygen in anaerobic conditions, which can speed up the process of breaking down other compounds that do not degrade quickly in anaerobic environments such as the hydrocarbon benzene. Adding chlorate-reducing bacteria to contaminated, oxygen-poor environments could therefore encourage the growth of other bacteria that need oxygen to break down other compounds found at these sites. Microbes usually need oxygen to break down benzene; in anaerobic environments, the process is very slow. Alicycliphilus denitrificans (strain JCM 14587 / BC) is Gram-negative bacterium which can break down both chlorates and benzene. It produces oxygen while breaking down chlorates, and the oxygen is used to speed up the degradation of benzene in anaerobic conditions. (Adapted from: http://www.ncbi.nlm.nih.gov/genomeprj/41663). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusAlicycliphilus
SpeciesAlicycliphilus denitrificans
StrainK601

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Alicycliphilus denitrificans K601

Accession NumberNC_015423.1

Gene Summary

Adenine Count

15078 bp

Thymine Count

13432 bp

Guanine Count

23437 bp

Cytosine Count

23541 bp

Genome Length

75488 bp

Protein-coding Genes

91 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
amino acid abc transporter atp-binding proteinALIDE2_RS03245Not Available+674078 - 67481527085.1
ornithine cyclodeaminaseALIDE2_RS03250Not Available-674921 - 67595536846.4
had-iib family hydrolaseALIDE2_RS03255Not Available-676016 - 67683729704.2
peptide chain release factor 3ALIDE2_RS03260Not Available-676840 - 67846560320.2
sdr family oxidoreductaseALIDE2_RS03265Not Available-678568 - 67933826948.4
adenosylhomocysteinaseALIDE2_RS03270Not Available+679580 - 68101051964.3
tlya family rna methyltransferaseALIDE2_RS03275Not Available+681117 - 68211835789.6
methylenetetrahydrofolate reductaseALIDE2_RS03280Not Available+682115 - 68294229812.7
septal ring lytic transglycosylase rlpa family proteinALIDE2_RS24825Not Available+682981 - 68368824626.7
23s rrna (adenine(2030)-n(6))-methyltransferase rlmjALIDE2_RS03290Not Available-683689 - 68458232145.7

Displaying genes 821 – 830 of 4902 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites