Thermococcus gammatolerans EJ3

CocciNon-motileAnaerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Thermococcus

Description

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) is an obligatory anaerobic heterotrophic hyperthermophilic archaeon isolated from samples collected from hydrothermal chimneys located in the mid-Atlantic Ridge and at the Guyamas basin. T. gammatolerans is obtained by culture enrichment after irradiation with gamma rays at massive doses (30 kGy). It grows optimally at 88 degrees Celsius in the presence of sulfur or cystine on yeast extract, tryptone and peptone, producing H2S. This organism withstands 5 kGy of radiation without any detectable lethality. Exposure to higher doses slightly reduces its viability whereas cell survival of other thermophilic radioresistant archaea drastically decreases when cells are exposed to such radiation doses. Based on these data, T. gammatolerans is one of the most radioresistant archaeon isolated and characterized thus far. An important feature of the T. gammatolerans genome is the absence of genes encoding transposases found in other Archaea, indicating they are not played a role in the evolution of the Thermococcus genomes. The genome of T. gammatolerans contains two virus-related regions, tgv1 (20,832 bp) and tgv2 (20,418 bp). Even if T. gammatolerans is grown with peptides and S, numerous metabolic pathways appear to be active, including those involved in sugar catabolism and amino acid metabolism. (Adaptated from PMID:19558674). (HAMAP: THEGJ)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusThermococcus
SpeciesThermococcus gammatolerans
StrainEJ3

Profile

Physiology
Gram staining propertiesNot Available
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature88
Temperature rangeHyperthermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceOrganotroph
PathogenicityNo

Genome Summary

Thermococcus gammatolerans EJ3


Gene Summary

Adenine Count

470421 bp

Thymine Count

479450 bp

Guanine Count

544605 bp

Cytosine Count

550962 bp

Genome Length

2045438 bp

Protein-coding Genes

2177 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinTGAM_RS00060Not Available+13154 - 1369619164.0
exosortase/archaeosortase family proteinTGAM_RS00065Not Available+13693 - 1453230555.8
carbohydrate-binding proteinTGAM_RS00070Not Available-14494 - 18183136437.0
glucodextranase domon-like domain-containing proteinTGAM_RS00075Not Available-18262 - 1918834414.7
duf1616 domain-containing proteinTGAM_RS00080Not Available+19317 - 2031837765.2
glycosyltransferase family 4 proteinTGAM_RS00085Q59002-20295 - 2140441959.5
sugar phosphate nucleotidyltransferaseTGAM_RS00090P37820-21439 - 2243437579.4
nad-dependent epimerase/dehydratase family proteinTGAM_RS00095Not Available+22526 - 2347635714.7
site-2 protease family proteinTGAM_RS00100Not Available+23586 - 2472541848.1
tigr00269 family proteinTGAM_RS00105D4GSH6+24834 - 2581137556.8

Displaying genes 11 – 20 of 2229 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

112 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001358lactateC3H5O3Chemical structure of lactateNot available
Average89.071Da
Monoisotopic89.0244176Da

Displaying 1–10 of 112 metabolites