Hyphomicrobium denitrificans ATCC 51888

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Hyphomicrobiaceae

Genus

Hyphomicrobium

Description

Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) is an aerobic, motile Gram-negative bacterium. It has a biphasic life style, which consists of a motile phase of flagellated swarmer cells, and a cessile phase in which a long prosthecate is produced at one end of the bacterium through which budding cells emerge. Newly budded cells in turn produce flagella and go through a motile phase and the cycle continues. H. denitrificans can colonize the surfaces of marine environments which enables additional species to colonize at later stages. It is also able to utilize methanol as a sole source of energy. (adapted from: http://genome.jgi-psf.org/hypde/hypde.home.html). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusHyphomicrobium
SpeciesHyphomicrobium denitrificans
StrainATCC 51888

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Hyphomicrobium denitrificans ATCC 51888
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Hyphomicrobium denitrificans ATCC 51888

Accession NumberNC_014313.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3429 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinHDEN_RS16375Not Available-3387261 - 338762013153.4
30s ribosomal protein s16HDEN_RS16380Not Available-3387754 - 338812213436.2
signal recognition particle proteinHDEN_RS16385Not Available-3388164 - 338974455812.5
acyloxyacyl hydrolaseHDEN_RS16390Not Available-3390103 - 339066319959.5
diaminopimelate epimeraseHDEN_RS16395Not Available+3391174 - 339204331220.3
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtabHDEN_RS16400Not Available+3392100 - 339335945723.1
signal recognition particle-docking protein ftsyHDEN_RS16405Not Available+3393356 - 339452840859.1
inner membrane-spanning protein ycibHDEN_RS16410Not Available+3394550 - 339521225304.2
septation protein aHDEN_RS16415Not Available+3395222 - 339582422617.2
marr family winged helix-turn-helix transcriptional regulatorHDEN_RS16420Not Available+3396149 - 339654114754.1

Displaying genes 3281 – 3290 of 3529 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites