Hyphomicrobium denitrificans ATCC 51888

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Hyphomicrobiaceae

Genus

Hyphomicrobium

Description

Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) is an aerobic, motile Gram-negative bacterium. It has a biphasic life style, which consists of a motile phase of flagellated swarmer cells, and a cessile phase in which a long prosthecate is produced at one end of the bacterium through which budding cells emerge. Newly budded cells in turn produce flagella and go through a motile phase and the cycle continues. H. denitrificans can colonize the surfaces of marine environments which enables additional species to colonize at later stages. It is also able to utilize methanol as a sole source of energy. (adapted from: http://genome.jgi-psf.org/hypde/hypde.home.html). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusHyphomicrobium
SpeciesHyphomicrobium denitrificans
StrainATCC 51888

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Hyphomicrobium denitrificans ATCC 51888
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Hyphomicrobium denitrificans ATCC 51888

Accession NumberNC_014313.1

Gene Summary

Adenine Count

700565 bp

Thymine Count

725459 bp

Guanine Count

1136928 bp

Cytosine Count

1076017 bp

Genome Length

3638969 bp

Protein-coding Genes

3429 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
urease accessory protein uregHDEN_RS13880Not Available-2893147 - 289375221523.9
urease subunit alphaHDEN_RS13885Not Available-2893798 - 289551060689.7
urease subunit gammaHDEN_RS13890Not Available-2895526 - 289622425241.4
urease accessory protein urefHDEN_RS13895Not Available-2896249 - 289692924581.3
urease accessory protein ureeHDEN_RS13900Not Available-2896926 - 289737817523.0
urea abc transporter atp-binding subunit urteHDEN_RS13905Not Available-2897384 - 289807925622.2
urea abc transporter atp-binding protein urtdHDEN_RS13910Not Available-2898072 - 289886928504.4
urea abc transporter permease subunit urtcHDEN_RS13915Not Available-2898866 - 289995739081.0
urea abc transporter permease subunit urtbHDEN_RS13920Not Available-2899972 - 290086231534.5
transporter substrate-binding domain-containing proteinHDEN_RS13925Not Available-2900914 - 290213143358.2

Displaying genes 2811 – 2820 of 3529 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites