Chitinophaga rupis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga rupis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics. This organism belongs to the phylum Bacteroidetes and is notable for its ability to thrive in oxygen-rich environments. The Gram-negative nature of C. rupis indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this group of bacteria and may confer specific advantages in its ecological niche. The rod shape of C. rupis is a common morphology among many bacteria, which can influence its motility and interaction with its environment. As an aerobic microbe, C. rupis relies on oxygen for its metabolic processes, which may play a critical role in its ecological adaptations. This trait suggests that C. rupis may be involved in specific biogeochemical cycles where oxygen availability is a determining factor. Interestingly, the presence of C. rupis in various environments may indicate its role in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and in fungal cell walls. This ability to degrade chitin could have significant implications for nutrient cycling in ecosystems, particularly in soil and marine environments where chitinous materials are abundant. Thus, C. rupis may contribute to the decomposition of organic matter and the recycling of nutrients in its habitat, highlighting its ecological significance in maintaining ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga rupis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga rupis

Accession NumberFOBB00000000.1

Gene Summary

Adenine Count

2199289 bp

Thymine Count

2199880 bp

Guanine Count

1998172 bp

Cytosine Count

1989318 bp

Genome Length

8387119 bp

Protein-coding Genes

6501 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
fad dependent oxidoreductaseSAMN04488505_111205Not Available+7522404 - 752436572370.5
hypothetical proteinSAMN04488505_111206Not Available-7524426 - 752574249749.1
d-alanyl-lipoteichoic acid acyltransferase dltb, mboat superfamilySAMN04488505_111207Not Available-7525780 - 752726757483.8
gdsl-like lipase/acylhydrolaseSAMN04488505_111208Not Available-7527301 - 752855446063.5
gdsl-like lipase/acylhydrolaseSAMN04488505_111209Not Available-7528598 - 752997751014.6
hypothetical proteinSAMN04488505_111210Not Available-7530002 - 75301244865.04
flagellum-specific peptidoglycan hydrolase flgjSAMN04488505_111211Not Available-7530090 - 753062320764.3
aspartyl-trna synthetaseSAMN04488505_111212Not Available-7530878 - 753262967119.3
glycine/d-amino acid oxidaseSAMN04488505_111213Not Available-7532757 - 753385441814.8
uncharacterized conserved protein yfas, alpha-2-macroglobulin familySAMN04488505_111214Not Available-7533921 - 7539974229669.0

Displaying genes 5951 – 5960 of 6565 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites