Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505

Gram-positiveAnaerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

Bifidobacterium pseudocatenulatum DSM 20438 is a gram-positive, rod-shaped bacterium, classified as a mesophile, that thrives in moderate temperatures. This microbe is a chemoheterotroph, deriving its energy from organic compounds while requiring organic carbon sources for growth. It is categorized as an obligate anaerobe, meaning it cannot survive in the presence of oxygen. Bifidobacterium pseudocatenulatum is part of the Bifidobacterium genus, which is commonly found in the gastrointestinal tracts of humans and other mammals, particularly in infants fed with breast milk. It plays a crucial role in the fermentation of dietary fibers, contributing to the production of short-chain fatty acids that are beneficial for gut health and overall metabolism. This bacterium can also be detected in other body sites, including the oral cavity and potentially the urogenital tract, reflecting its significance in maintaining microbiota balance in various ecosystems within the host. The morphology of Bifidobacterium pseudocatenulatum, appearing as small, branched rods, distinguishes it from other genera of bacteria. In terms of growth conditions, this species flourishes in the anaerobic environments of the gut, where it performs vital functions such as probiotic activities, enhancing gut barrier function, and modulating immune responses.Moreover, Bifidobacterium pseudocatenulatum has garnered attention for its potential in probiotic applications, particularly in supporting digestive health, combating pathogenic bacteria, and enhancing lactose digestion in lactose-intolerant individuals. Its ability to thrive in diverse environments and contribute positively to host health makes it an essential subject of study in microbiology and nutrition.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium pseudocatenulatum
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505


Gene Summary

Adenine Count

505788 bp

Thymine Count

501948 bp

Guanine Count

642821 bp

Cytosine Count

654251 bp

Genome Length

2304808 bp

Protein-coding Genes

2151 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
16s ribosomal rnaNot AvailableNot Available+1 - 1047Not Available
5s ribosomal rnaNot AvailableNot Available+264 - 380Not Available
5s ribosomal rnaNot AvailableNot Available+365 - 481Not Available
5s ribosomal rnaNot AvailableNot Available+375 - 491Not Available
5s ribosomal rnaNot AvailableNot Available+512 - 628Not Available
5s ribosomal rnaNot AvailableNot Available+571 - 687Not Available
5s ribosomal rnaNot AvailableNot Available+675 - 791Not Available
hypothetical proteinBIFPSEUDO_02300Not Available-56 - 74224091.3
uracil-dna glycosylaseBIFPSEUDO_02301Q8G3E9+911 - 162125566.8
hypothetical proteinBIFPSEUDO_02302P94474+1691 - 270736442.1

Displaying genes 1 – 10 of 2221 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

324 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00007052-dehydro-3-deoxy-D-arabinonateC5H7O5Chemical structure of 2-dehydro-3-deoxy-D-arabinonateNot available
Average147.107Da
Monoisotopic147.0298969Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 324 metabolites