Deinococcus deserti VCD115

Gram-negativeRodNon-motileAerobe

Kingdom

Thermotogati

Phylum

Deinococcota

Class

Deinococci

Order

Deinococcales

Family

Deinococcaceae

Genus

Deinococcus

Description

Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) is an aerobic, radiation-resistant bacterium isolated from upper gamma-irradiated sand layers of the Sahara. D. deserti is resistant to gamma radiation, UV radiation, and desiccation due to a very efficient DNA repair mechanism. Heavy UV- and desiccation-induced damage to membranes, proteins and nucleic acids is lethal to most organisms. Vegetative bacteria that survive these stresses must therefore either protect vital components from damage and/or repair them efficiently, especially upon rehydration. The tolerance of D. deserti to high doses of ionizing radiation is a consequence of its response to natural DNA damaging conditions such as desiccation. Repair of massive DNA damage in D. deserti involves widespread DNA repair proteins, such as RecA and PolA. Besides its resistance to high doses of gamma and UV radiation, D. deserti also tolerated prolonged desiccation, with about 50% survival after 40 days of desiccation. The tolerance of D. deserti to desiccation is related to efficient DNA repair rather than DNA protection mechanisms. (adapated from PMID: 19201974). (EBI Integr8)

Taxonomy

KingdomThermotogati
PhylumDeinococcota
ClassDeinococci
OrderDeinococcales
FamilyDeinococcaceae
GenusDeinococcus
SpeciesDeinococcus deserti
StrainVCD115

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Deinococcus deserti VCD115
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature29
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Deinococcus deserti VCD115

Accession NumberNC_012526.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2630 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
para family proteinDEIDE_RS16015Not Available+160 - 94528523.5
parb/repb/spo0j family partition proteinDEIDE_RS16020Not Available+1002 - 183231456.1
pas domain s-box proteinDEIDE_RS16025Not Available+2633 - 457971888.7
hypothetical proteinDEIDE_RS19690Not Available-5103 - 53579367.28
serine hydrolase domain-containing proteinDEIDE_RS16040Not Available-5710 - 710750063.4
nucleotidyltransferase domain-containing proteinDEIDE_RS16045Not Available-7271 - 829937887.3
hu family dna-binding proteinDEIDE_RS16050Not Available+8604 - 896912391.3
duf1348 family proteinDEIDE_RS16055Not Available+9798 - 1026218741.7
fadr/gntr family transcriptional regulatorDEIDE_RS16060Not Available-10837 - 1156827424.2
abc transporter substrate-binding proteinDEIDE_RS16065Not Available+11832 - 1311546862.9

Displaying genes 1 – 10 of 3565 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

35 records
Metabolite IDMetabolite nameStructureCAS number
BASm0017311Adenylsuccinic acidC14H18N5O11PChemical structure of Adenylsuccinic acid19046-78-7
Average463.2934Da
Monoisotopic463.074042955Da
BASm0017328AICARC9H15N4O8PChemical structure of AICAR3031-94-5
Average338.2112Da
Monoisotopic338.062749988Da
BASm0017364(R)-2,3-Dihydroxy-isovalerateC5H10O4Chemical structure of (R)-2,3-Dihydroxy-isovalerateNULL
Average134.1305Da
Monoisotopic134.057908808Da
BASm0017450(R) 2,3-Dihydroxy-3-methylvalerateC6H12O4Chemical structure of (R) 2,3-Dihydroxy-3-methylvalerate562-43-6
Average148.1571Da
Monoisotopic148.073558872Da
BASm0034737(6S)-5,6,7,8-tetrahydrofolic acidC19H23N7O6Chemical structure of (6S)-5,6,7,8-tetrahydrofolic acidNULL
Average445.4292Da
Monoisotopic445.170981503Da

Displaying 31–35 of 35 metabolites