Desulfomicrobium baculatum DSM 4028

Gram-negativeRodMotileAnaerobic

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfovibrionia

Order

Desulfovibrionales

Family

Desulfomicrobiaceae

Genus

Desulfomicrobium

Description

Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) is a strictly anaerobic, mesophilic, sulfate reducer Gram-negative bacterium, originally isolated from water-saturated manganese carbonate ore. Its metabolism is respiratory or fermentative. It reduces sulfate to sulphide, and in the presence of sulfate, pyruvate and lactate are incompletely oxidized to acetate and CO2. Furthermore, sulfate, sulfite and thiosulfate are used as electron acceptors and are reduced to H2S. It is not able to reduce nitrate. Malate, fumarate and pyruvate can be fermented with succinate and acetate as end products, but the carbohydrates are not fermented. D. baculatum does not require NaCl for growth, although NaCl concentrations up to 6% (w/v) are tolerated, and has an optimal growth temperature between 28-37 degrees Celsius. Vitamins are not required for growth . This is the first completed genome sequence of a member of the deltaproteobacterial family Desulfomicrobiaceae (Adapted from PMID 21304634). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfomicrobiaceae
GenusDesulfomicrobium
SpeciesDesulfomicrobium baculatum
StrainDSM 4028

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Desulfomicrobium baculatum DSM 4028
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Desulfomicrobium baculatum DSM 4028

Accession NumberNC_013173.1

Gene Summary

Adenine Count

813472 bp

Thymine Count

816935 bp

Guanine Count

1155369 bp

Cytosine Count

1156881 bp

Genome Length

3942657 bp

Protein-coding Genes

3453 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
phosphonate c-p lyase system protein phnhDBAC_RS04145Not Available+887948 - 88855621608.1
carbon-phosphorus lyase complex subunit phniDBAC_RS04150Not Available+888547 - 88966240963.7
alpha-d-ribose 1-methylphosphonate 5-phosphate c-p-lyase phnjDBAC_RS04155Not Available+889652 - 89050631835.9
phosphonate c-p lyase system protein phnkDBAC_RS04160Not Available+890506 - 89127928635.7
phosphonate c-p lyase system protein phnlDBAC_RS04165Not Available+891287 - 89197924998.3
alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphataseDBAC_RS04170Not Available+891983 - 89312541776.8
phosphonate metabolism protein/1,5-bisphosphokinase (prpp-forming) phnnDBAC_RS04175Not Available+893455 - 89401820233.5
daph/dapd/glmu-related proteinDBAC_RS04180Not Available+894015 - 89462622621.1
nucleotidyl transferase abieii/abigii toxin family proteinDBAC_RS04185Not Available-894660 - 89510616589.6
type ii toxin-antitoxin system rele family toxinDBAC_RS04190Not Available-895256 - 89551910098.3

Displaying genes 851 – 860 of 3541 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites