Actinomyces urogenitalis DSM 15434

Gram-positiveFacultative anaerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Actinomycetales

Family

Actinomycetaceae

Genus

Actinomyces

Description

Actinomyces urogenitalis DSM 15434 is a gram-positive, rod-shaped bacterium that is classified as a facultative anaerobe, thriving at mesophilic temperatures ranging from 20°C to 45°C. As a chemoheterotroph, this microbe obtains its energy and carbon from organic compounds, which it metabolizes in various environments. A. urogenitalis is found predominantly in the urogenital tracts of humans, but it can also be isolated from other body sites, including the oral cavity, gastrointestinal tract, and respiratory system. The gram-positive nature of A. urogenitalis indicates a thick peptidoglycan layer in its cell wall, which contributes to its robustness and ability to survive in a variety of conditions. The rod shape allows for efficient mobility and colonization of host tissues. As a facultative anaerobe, A. urogenitalis can adapt to both aerobic and anaerobic environments, showcasing its flexibility in utilizing oxygen or fermentation pathways based on environmental availability. The classification as a chemoheterotroph signifies that A. urogenitalis relies on organic substrates for growth, making it an integral part of the human microbiome as it helps in the breakdown of complex organic materials in the urogenital tract and other body sites. This metabolic versatility enables it to play a role in maintaining homeostasis within the microbial community. Furthermore, A. urogenitalis has been implicated in various human health conditions, particularly in cases of infections associated with the urogenital tract. Its presence in clinical specimens underscores the need for accurate identification in diagnostic microbiology, as it can be a marker for certain pathological states. Understanding this microbe's role in health and disease further emphasizes its importance in the study of human microbiota.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderActinomycetales
FamilyActinomycetaceae
GenusActinomyces
SpeciesActinomyces urogenitalis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Actinomyces urogenitalis DSM 15434

Accession NumberACFH00000000.1

Gene Summary

Adenine Count

403573 bp

Thymine Count

413864 bp

Guanine Count

909427 bp

Cytosine Count

887153 bp

Genome Length

2614023 bp

Protein-coding Genes

2395 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hnh endonucleaseHMPREF0058_1238Not Available+1358820 - 13590719195.9
hypothetical proteinHMPREF0058_1239Not Available+1359300 - 135957810027.9
Terminase large subunitHMPREF0058_1240Not Available+1359496 - 136093852367.7
Portal proteinHMPREF0058_1241Not Available+1360954 - 136236051226.5
Capsid maturation proteaseHMPREF0058_1242Not Available+1362360 - 136364948272.1
Hypothetical proteinHMPREF0058_1243Not Available+1364171 - 136456913996.2
Major capsid proteinHMPREF0058_1244Not Available+1364629 - 136560033854.3
Hypothetical proteinHMPREF0058_1245Not Available+1365765 - 136616013978.5
hypothetical proteinHMPREF0058_1246Not Available+1366157 - 136651012027.1
hypothetical proteinHMPREF0058_1247Not Available+1366514 - 136688512602.9

Displaying genes 1 – 10 of 2458 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

352 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000701aldehydo-D-apioseC5H10O5Chemical structure of aldehydo-D-apioseNot available
Average150.13Da
Monoisotopic150.052823422Da
BASm00007131,5-anhydro-D-fructoseC6H10O5Chemical structure of 1,5-anhydro-D-fructoseNot available
Average162.1406Da
Monoisotopic162.05282343Da
BASm0000738D-lyxoseC5H10O5Chemical structure of D-lyxose1114-34-7
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 11–20 of 352 metabolites