Kingdom
Pseudomonadati
Phylum
Planctomycetota
Class
Planctomycetia
Order
Planctomycetales
Family
Planctomycetaceae
Genus
Planctopirus
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Planctomycetota |
| Class | Planctomycetia |
| Order | Planctomycetales |
| Family | Planctomycetaceae |
| Genus | Planctopirus |
| Species | Planctopirus limnophila |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Cocci |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Aquatic |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Planctopirus limnophila DSM 3776
Accession NumberNC_014149.1
Gene Summary
Adenine Count
8422 bp
Thymine Count
7481 bp
Guanine Count
10628 bp
Cytosine Count
10479 bp
Genome Length
37010 bp
Protein-coding Genes
48 genes
Non-Coding Genes
8 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| zinc-dependent alcohol dehydrogenase family protein | PLIM_RS03875 | Q28GQ2 | + | 949467 - 950501 | 36955.8 |
| nodulation protein nfed | PLIM_RS03880 | P54465 | + | 950710 - 953196 | 88701.2 |
| set domain-containing protein | PLIM_RS03885 | Not Available | + | 953419 - 953904 | 17944.6 |
| 30s ribosomal protein s4 | PLIM_RS03890 | Q7UXM6 | + | 954086 - 954694 | 22878.0 |
| nucleoside monophosphate kinase | PLIM_RS03895 | Q72I25 | + | 954910 - 955536 | 23568.4 |
| uma2 family endonuclease | PLIM_RS03900 | Not Available | + | 955705 - 956262 | 20649.5 |
| 30s ribosomal protein s12 methylthiotransferase rimo | PLIM_RS03905 | Q7UK39 | + | 956350 - 957780 | 53379.2 |
| cation:proton antiporter | PLIM_RS03910 | Not Available | + | 957943 - 959430 | 52223.2 |
| trna-binding protein | PLIM_RS03915 | A6GVQ2 | - | 959471 - 959815 | 12640.2 |
| phosphoribosylformylglycinamidine cyclo-ligase | PLIM_RS03920 | Q7UI59 | + | 960064 - 961128 | 38299.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.