Kingdom
Pseudomonadati
Phylum
Planctomycetota
Class
Planctomycetia
Order
Planctomycetales
Family
Planctomycetaceae
Genus
Planctopirus
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Planctomycetota |
| Class | Planctomycetia |
| Order | Planctomycetales |
| Family | Planctomycetaceae |
| Genus | Planctopirus |
| Species | Planctopirus limnophila |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Cocci |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Aquatic |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Planctopirus limnophila DSM 3776
Accession NumberNC_014149.1
Gene Summary
Adenine Count
8422 bp
Thymine Count
7481 bp
Guanine Count
10628 bp
Cytosine Count
10479 bp
Genome Length
37010 bp
Protein-coding Genes
48 genes
Non-Coding Genes
8 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PLIM_RS03565 | Not Available | - | 868369 - 868956 | 20361.7 |
| efflux rnd transporter permease subunit | PLIM_RS03570 | Not Available | - | 869068 - 872346 | 119674.0 |
| efflux rnd transporter periplasmic adaptor subunit | PLIM_RS03575 | Not Available | - | 872361 - 873911 | 57589.2 |
| hypothetical protein | PLIM_RS03580 | Not Available | - | 874097 - 874570 | 16906.2 |
| hrdc domain-containing protein | PLIM_RS03585 | Q6G329 | - | 874793 - 876064 | 48375.9 |
| phytanoyl-coa dioxygenase family protein | PLIM_RS03590 | Not Available | + | 876340 - 877182 | 31411.6 |
| single-stranded-dna-specific exonuclease recj | PLIM_RS03595 | O32044 | + | 877348 - 879099 | 63727.5 |
| tetratricopeptide repeat protein | PLIM_RS03600 | Not Available | - | 879357 - 880850 | 57482.7 |
| duf1080 domain-containing protein | PLIM_RS03605 | Not Available | + | 881084 - 882121 | 37313.3 |
| polysaccharide deacetylase family protein | PLIM_RS03610 | Not Available | - | 882126 - 883139 | 38795.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.