Kingdom
Pseudomonadati
Phylum
Planctomycetota
Class
Planctomycetia
Order
Planctomycetales
Family
Planctomycetaceae
Genus
Planctopirus
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Planctomycetota |
| Class | Planctomycetia |
| Order | Planctomycetales |
| Family | Planctomycetaceae |
| Genus | Planctopirus |
| Species | Planctopirus limnophila |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Cocci |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Aquatic |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Planctopirus limnophila DSM 3776
Accession NumberNC_014149.1
Gene Summary
Adenine Count
8422 bp
Thymine Count
7481 bp
Guanine Count
10628 bp
Cytosine Count
10479 bp
Genome Length
37010 bp
Protein-coding Genes
48 genes
Non-Coding Genes
8 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transcription-repair coupling factor | PLIM_RS19180 | P37474 | + | 4790420 - 4793731 | 124261.0 |
| tolb family protein | PLIM_RS19185 | Not Available | + | 4793829 - 4794893 | 39891.7 |
| smi1/knr4 family protein | PLIM_RS23275 | Not Available | - | 4795203 - 4795613 | 15399.8 |
| leucine--trna ligase | PLIM_RS19200 | Q7UMC0 | - | 4796575 - 4799385 | 105620.0 |
| thioredoxin family protein | PLIM_RS19205 | Not Available | + | 4799829 - 4800662 | 29940.7 |
| nad-dependent epimerase | PLIM_RS19210 | Q04871 | + | 4800861 - 4801874 | 37819.3 |
| udp-glucose/gdp-mannose dehydrogenase family protein | PLIM_RS19215 | O86422 | + | 4801977 - 4803287 | 48240.2 |
| s1c family serine protease | PLIM_RS19220 | Not Available | - | 4803367 - 4804566 | 42566.1 |
| gtpase | PLIM_RS19225 | Not Available | + | 4804875 - 4806731 | 70063.0 |
| hypothetical protein | PLIM_RS19230 | Not Available | - | 4806807 - 4809758 | 108561.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.