Planctopirus limnophila DSM 3776

Gram-negativeCocciMotileAerobe

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Planctomycetales

Family

Planctomycetaceae

Genus

Planctopirus

Description

Planctopirus limnophila DSM 3776 is a Gram-negative, nonsporulating coccus that thrives in aquatic environments and exhibits aerobic metabolism. This microbe's spherical shape is characteristic of many cocci, contributing to its identification within its ecological niche. As an aerobe, Planctopirus limnophila requires oxygen for survival and growth, indicating its adaptation to oxygen-rich habitats typically found in freshwater systems. The presence of this organism in aquatic ecosystems suggests it may play a role in biogeochemical cycles, potentially influencing nutrient availability and microbial community dynamics. Given its specific habitat and metabolic requirements, Planctopirus limnophila may interact closely with other microorganisms in its environment, possibly contributing to processes such as organic matter decomposition or nutrient cycling. Understanding the ecological roles of microbes like Planctopirus limnophila is crucial for comprehending the complexities of aquatic ecosystems and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusPlanctopirus
SpeciesPlanctopirus limnophila
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Planctopirus limnophila DSM 3776
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planctopirus limnophila DSM 3776

Accession NumberNC_014149.1

Gene Summary

Adenine Count

8422 bp

Thymine Count

7481 bp

Guanine Count

10628 bp

Cytosine Count

10479 bp

Genome Length

37010 bp

Protein-coding Genes

48 genes

Non-Coding Genes

8 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
ldh family oxidoreductasePLIM_RS18155Not Available+4556628 - 455768338057.5
pyridoxal phosphate-dependent aminotransferasePLIM_RS18160Q60317+4557776 - 455889741588.0
abc-2 family transporter proteinPLIM_RS18165Not Available+4558976 - 455987534143.8
pyruvate dehydrogenase (acetyl-transferring), homodimeric typePLIM_RS18170Q59637+4560229 - 4562982101728.0
2-oxo acid dehydrogenase subunit e2PLIM_RS18175Q59098+4563067 - 456434444380.7
lysr family transcriptional regulatorPLIM_RS18180P71318+4564844 - 456572233166.4
srpbcc family proteinPLIM_RS18185Not Available-4565779 - 456622216580.0
sialate o-acetylesterasePLIM_RS18190Not Available-4566333 - 456737638039.1
srpbcc family proteinPLIM_RS18200Not Available+4568007 - 456842015485.8
dead/deah box helicasePLIM_RS18205Q86WJ1-4568504 - 457112298994.0

Displaying genes 3451 – 3460 of 4126 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites