Kingdom
Pseudomonadati
Phylum
Planctomycetota
Class
Planctomycetia
Order
Planctomycetales
Family
Planctomycetaceae
Genus
Planctopirus
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Planctomycetota |
| Class | Planctomycetia |
| Order | Planctomycetales |
| Family | Planctomycetaceae |
| Genus | Planctopirus |
| Species | Planctopirus limnophila |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Cocci |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Aquatic |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Planctopirus limnophila DSM 3776
Accession NumberNC_014149.1
Gene Summary
Adenine Count
8422 bp
Thymine Count
7481 bp
Guanine Count
10628 bp
Cytosine Count
10479 bp
Genome Length
37010 bp
Protein-coding Genes
48 genes
Non-Coding Genes
8 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ldh family oxidoreductase | PLIM_RS18155 | Not Available | + | 4556628 - 4557683 | 38057.5 |
| pyridoxal phosphate-dependent aminotransferase | PLIM_RS18160 | Q60317 | + | 4557776 - 4558897 | 41588.0 |
| abc-2 family transporter protein | PLIM_RS18165 | Not Available | + | 4558976 - 4559875 | 34143.8 |
| pyruvate dehydrogenase (acetyl-transferring), homodimeric type | PLIM_RS18170 | Q59637 | + | 4560229 - 4562982 | 101728.0 |
| 2-oxo acid dehydrogenase subunit e2 | PLIM_RS18175 | Q59098 | + | 4563067 - 4564344 | 44380.7 |
| lysr family transcriptional regulator | PLIM_RS18180 | P71318 | + | 4564844 - 4565722 | 33166.4 |
| srpbcc family protein | PLIM_RS18185 | Not Available | - | 4565779 - 4566222 | 16580.0 |
| sialate o-acetylesterase | PLIM_RS18190 | Not Available | - | 4566333 - 4567376 | 38039.1 |
| srpbcc family protein | PLIM_RS18200 | Not Available | + | 4568007 - 4568420 | 15485.8 |
| dead/deah box helicase | PLIM_RS18205 | Q86WJ1 | - | 4568504 - 4571122 | 98994.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.