Planctopirus limnophila DSM 3776

Gram-negativeCocciMotileAerobe

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Planctomycetales

Family

Planctomycetaceae

Genus

Planctopirus

Description

Planctopirus limnophila DSM 3776 is a Gram-negative, nonsporulating coccus that thrives in aquatic environments and exhibits aerobic metabolism. This microbe's spherical shape is characteristic of many cocci, contributing to its identification within its ecological niche. As an aerobe, Planctopirus limnophila requires oxygen for survival and growth, indicating its adaptation to oxygen-rich habitats typically found in freshwater systems. The presence of this organism in aquatic ecosystems suggests it may play a role in biogeochemical cycles, potentially influencing nutrient availability and microbial community dynamics. Given its specific habitat and metabolic requirements, Planctopirus limnophila may interact closely with other microorganisms in its environment, possibly contributing to processes such as organic matter decomposition or nutrient cycling. Understanding the ecological roles of microbes like Planctopirus limnophila is crucial for comprehending the complexities of aquatic ecosystems and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderPlanctomycetales
FamilyPlanctomycetaceae
GenusPlanctopirus
SpeciesPlanctopirus limnophila
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Planctopirus limnophila DSM 3776
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Planctopirus limnophila DSM 3776

Accession NumberNC_014149.1

Gene Summary

Adenine Count

8422 bp

Thymine Count

7481 bp

Guanine Count

10628 bp

Cytosine Count

10479 bp

Genome Length

37010 bp

Protein-coding Genes

48 genes

Non-Coding Genes

8 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
ribosome recycling factorPLIM_RS16820Q7UTH0-4224070 - 422463020808.9
pyruvate kinasePLIM_RS16825Q55863-4225008 - 422647152801.1
pas domain s-box proteinPLIM_RS16830P26762+4226878 - 4229925112345.0
rhomboid family intramembrane serine proteasePLIM_RS16835A7FNW6+4229986 - 423127848810.1
nad+ synthasePLIM_RS16840P74292-4231557 - 423322160817.0
4-hydroxy-tetrahydrodipicolinate reductasePLIM_RS16845Q7UJD7-4233345 - 423414827932.5
cupinPLIM_RS16850Not Available-4234206 - 423456513026.5
trna epoxyqueuosine(34) reductase quegPLIM_RS16855Q9HUL4-4234622 - 423586345552.4
secretin and tonb n-terminal domain-containing proteinPLIM_RS16860Not Available-4235904 - 423854995041.0
hypothetical proteinPLIM_RS16865Not Available-4238648 - 423938526416.9

Displaying genes 3211 – 3220 of 4126 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites