Kingdom
Pseudomonadati
Phylum
Planctomycetota
Class
Planctomycetia
Order
Planctomycetales
Family
Planctomycetaceae
Genus
Planctopirus
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Planctomycetota |
| Class | Planctomycetia |
| Order | Planctomycetales |
| Family | Planctomycetaceae |
| Genus | Planctopirus |
| Species | Planctopirus limnophila |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Cocci |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Aquatic |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Planctopirus limnophila DSM 3776
Accession NumberNC_014149.1
Gene Summary
Adenine Count
8422 bp
Thymine Count
7481 bp
Guanine Count
10628 bp
Cytosine Count
10479 bp
Genome Length
37010 bp
Protein-coding Genes
48 genes
Non-Coding Genes
8 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| murein biosynthesis integral membrane protein murj | PLIM_RS00995 | O34238 | - | 253326 - 255113 | 64663.8 |
| protein-disulfide reductase dsbd domain-containing protein | PLIM_RS01000 | Not Available | - | 255280 - 255915 | 23224.9 |
| sigma-54-dependent fis family transcriptional regulator | PLIM_RS22195 | Not Available | - | 255994 - 259290 | 121934.0 |
| nucleoside triphosphate pyrophosphatase | PLIM_RS22200 | Q73K74 | + | 259864 - 260487 | 23441.0 |
| trna-dihydrouridine synthase | PLIM_RS01015 | Q9HUW1 | + | 260466 - 261692 | 44386.2 |
| Trna-lys | Not Available | Not Available | + | 261813 - 261885 | Not Available |
| uracil-dna glycosylase family protein | PLIM_RS01025 | Q5SKC5 | - | 262016 - 262933 | 33330.4 |
| mfs transporter | PLIM_RS01030 | Not Available | - | 262930 - 264294 | 48107.3 |
| thioredoxin family protein | PLIM_RS01040 | Not Available | - | 264575 - 265204 | 23343.2 |
| undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferase | PLIM_RS01045 | Q748D6 | + | 265613 - 266746 | 41523.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.